Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51980 250 / 1e-81 ARM repeat superfamily protein (.1) AT5G02150 71 / 3e-14 Fes1C Fes1C (.1.2) AT3G09350 70 / 1e-13 Fes1A Fes1A (.1.2.3) AT3G53800 64 / 1e-11 Fes1B Fes1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072200 [exp] 349 / 2e-120 AT3G51980 414 / 5e-144 ARM repeat superfamily protein (.1) Potri.016G100500 [exp] 65 / 7e-12 AT3G09350 472 / 3e-167 Fes1A (.1.2.3) Potri.006G088000 [exp] 63 / 3e-11 AT3G09350 516 / 0.0 Fes1A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023269 [exp] 292 / 1e-97 AT3G51980 397 / 4e-137 ARM repeat superfamily protein (.1) Lus10038535 [exp] 287 / 7e-96 AT3G51980 404 / 1e-139 ARM repeat superfamily protein (.1) Lus10003961 [exp] 59 / 6e-10 AT3G09350 523 / 0.0 Fes1A (.1.2.3) Lus10023786 [exp] 59 / 7e-10 AT3G09350 522 / 0.0 Fes1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08609 [poplar] [flax] Fes1 Nucleotide exchange factor Fes1
Representative CDS sequence Show only first row Show all	>Potri.003G158701.1 pacid=42785197 polypeptide=Potri.003G158701.1.p locus=Potri.003G158701 ID=Potri.003G158701.1.v4.1 annot-version=v4.1 ATGGAGCGTGTCGTTTTAAGGTTTCTGTTGGCCTCGGCAGTGATTTTAACCGCTGCAACGGTGATTAGTGGCGAGCGAGTCAATGAAACTTCTGCTACAG CGGAGTTAGTGTGGTCAAAAGGAAAACTGGAGTCTGATCTCTTGAGCAAGCCTCAGCCGGGAAACAGCGACTATTTATCCGCGGGTGCGGATGTTGACGA CCATGACGGCGGGTTTTCTTCTCTTGATGGAGTGTTACGATGGACCATTGGGCATTCTGATCCAGCGAAATTAAAAGAAAGTGCAGAAGATGTTCAGAGG TTGTCTGCTAAGTTGATAGAGAAGATGAACATGCCATCCGATGCACAGTTGATGCAGATAGCGATAGATGATTTAAACAATTCATCTTCATCTTTGGAAG ATCGCCAACGTGCGTTGCAGGAACTTCTCATACTTGTTGAGCCACTTGATAATGCAAATGATTTGAACAAACTTGGTGGTCTTGCCATAGTAATCCAAGA ACTTAATCATCCTGACCCAGACATAAGGAGACTTTCTGCATGGGTTCTTGGAAAAGCTTATCAAAATAATCCAGTTGTTCAAAAACAGATTTTGGAACTT GGGGCACTGACTAAGCTAATAAAGATGGTAAAATCTAATTCCATAGAAGAAGCCATTAAAGCACTATATGCTGTTTCGGCATTGATCCGAAACAATTTAT CTGGTCAGGAGTTGTTTTATGCTGAAGCTGGGGATACAATGCTTCAGGAAATATGGAGGGGAAAATGGTTTTAA
AA sequence Show only first row Show all	>Potri.003G158701.1 pacid=42785197 polypeptide=Potri.003G158701.1.p locus=Potri.003G158701 ID=Potri.003G158701.1.v4.1 annot-version=v4.1 MERVVLRFLLASAVILTAATVISGERVNETSATAELVWSKGKLESDLLSKPQPGNSDYLSAGADVDDHDGGFSSLDGVLRWTIGHSDPAKLKESAEDVQR LSAKLIEKMNMPSDAQLMQIAIDDLNNSSSSLEDRQRALQELLILVEPLDNANDLNKLGGLAIVIQELNHPDPDIRRLSAWVLGKAYQNNPVVQKQILEL GALTKLIKMVKSNSIEEAIKALYAVSALIRNNLSGQELFYAEAGDTMLQEIWRGKWF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51980			ARM repeat superfamily protein...		Potri.003G158701 [exp]	0	1
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.003G200000 [exp]	14.83	0.7321
AT4G35870			early-responsive to dehydratio...		Potri.007G063700 [exp]	16.09	0.6913
AT1G53710			Calcineurin-like metallo-phosp...		Potri.001G161100 [exp]	20.49	0.7264
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	20.78	0.7254
					Potri.001G422750 [exp]	21.35	0.7503
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Potri.005G124400 [exp]	25.49	0.6728
AT1G03080			kinase interacting (KIP1-like)...		Potri.005G213400 [exp]	26.73	0.6794
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.013G105900 [exp]	33.24	0.7130
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.012G109100 [exp]	34.89	0.6865
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.004G168400 [exp]	42.07	0.6973

Compare expression of checked genes

Potri.003G158701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.