Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09760 283 / 3e-96 U2A' U2 small nuclear ribonucleoprotein A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072100 [exp] 434 / 2e-155 AT1G09760 328 / 4e-114 U2 small nuclear ribonucleoprotein A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000970 [exp] 292 / 1e-98 AT1G09760 367 / 1e-128 U2 small nuclear ribonucleoprotein A (.1) Lus10028659 [exp] 287 / 3e-97 AT1G09760 365 / 1e-128 U2 small nuclear ribonucleoprotein A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G158800.2 pacid=42786203 polypeptide=Potri.003G158800.2.p locus=Potri.003G158800 ID=Potri.003G158800.2.v4.1 annot-version=v4.1 ATGGTGAGACTGACAGCCGACTTGATTTGGAAAAGCCCTCATTTCTTCAATGCCATCAAGGAACGCGAATTGGATCTTCGAGGTAACAAGATTCCTGTAA TTGAAAACTTGGGTGCTACTGAGGACCAATTTGATACGATTGATTTGTCTGACAATGAGATTGTCAAGCTGGAAAACATGCCATATCTTAATCGGTTGGG CACTTTGATAATTAATAACAACAGAATTACCCGAATCAATCCCAACATTGGAGAGTACTTGCCAAAACTACACACGTTGGTTCTTACAAATAATAGGCTT GTCAATTTGGCGGAGATTGATCCTCTCTCTTCTCTTCCAAAGCTGCAGTTCCTTAGTCTTTTGGATAATACCATTACAAAAAAGCCAAATTATAGGCTGT ACGTGATTCATAAACTAAAATCACTCCGGGTTCTTGATTTTAAGAAAGTCAAAGCCAAGGAGAGAGCAGAAGCAGAACATTTGTTTTCATCCAAAGAGGT TGAAGAAGAGGCTAAAAGGGAATCTGTCAAGACATTCACTCCAGGTGAGATTCCAAACATTCCAGAAGTTGCAGAGGAACAACAGGCTCCTAAAGTGGTT GCCCCTACACCTGAGCAGATTATAGCAATCAAGGCTGCCATTGTCAATTCCCAGACTCTTGAAGAGGTGGCACGACTTGAGAAGGCATTAAACTCCGGCC AGCTTCCTGCAGATCTTAAAATTTTGGATGATACTGGATCAAACAGTGTCAAAGAACAAGATGACAAAATGGCTACTGACAGTCAAAATGAGGCTGAACC AAACAATTTGGAGGAACAGAAGGATAATGAAGCCACACCTATGGAACAGGAATAA
AA sequence Show only first row Show all	>Potri.003G158800.2 pacid=42786203 polypeptide=Potri.003G158800.2.p locus=Potri.003G158800 ID=Potri.003G158800.2.v4.1 annot-version=v4.1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENMPYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRL VNLAEIDPLSSLPKLQFLSLLDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFTPGEIPNIPEVAEEQQAPKVV APTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLKILDDTGSNSVKEQDDKMATDSQNEAEPNNLEEQKDNEATPMEQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.003G158800 [exp]	0	1
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.004G197200 [exp]	2.23	0.8124
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.001G024500 [exp]	4.58	0.8017	Pt-IMP4.1
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	6.48	0.8077
AT4G27585			SPFH/Band 7/PHB domain-contain...		Potri.015G001900 [exp]	9.79	0.7635
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.014G027200 [exp]	14.14	0.7867
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Potri.001G255600 [exp]	14.96	0.7087
AT3G49080			Ribosomal protein S5 domain 2-...		Potri.012G144700 [exp]	15.16	0.7754
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.017G080700 [exp]	16.52	0.7724
AT2G39795			Mitochondrial glycoprotein fam...		Potri.010G198600 [exp]	17.14	0.7783
AT5G28060			Ribosomal protein S24e family ...		Potri.013G036100 [exp]	17.32	0.7843	Pt-RPS24.2

Compare expression of checked genes

Potri.003G158800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.