Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 492 / 8e-173 Protein of unknown function (DUF1624) AT5G27730 340 / 9e-113 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071500 [exp] 713 / 0 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 426 / 3e-146 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 392 / 6e-134 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 380 / 4e-129 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 376 / 2e-126 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.013G016900 [exp] 348 / 9e-116 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 317 / 8e-104 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010030 [exp] 425 / 1e-145 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10027468 [exp] 342 / 2e-114 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10020653 [exp] 333 / 1e-109 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 330 / 2e-108 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10039223 [exp] 327 / 2e-108 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10022615 [exp] 324 / 6e-106 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10019798 [exp] 290 / 2e-94 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10036333 [exp] 254 / 1e-81 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10000090 [exp] 143 / 5e-40 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624) Lus10014112 [exp] 138 / 6e-36 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [poplar] [flax] Acyl_transf_3 PF07786 [poplar] [flax] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Potri.003G159200.2 pacid=42785143 polypeptide=Potri.003G159200.2.p locus=Potri.003G159200 ID=Potri.003G159200.2.v4.1 annot-version=v4.1 ATGGCAATGGCGATGACAATGGCAATGTACAAGCCTATTAAAGGGCAAGAGGAGGAAGACAACGGGAATAGAAACAAGTCCTTGAAAAGTAATGATGAAG ATGGTGTTGGGGGTGATCATACAATTGTGGATGACAGCAAAACTTTTATCCTCCCCACTCATTCAAAGCAACAACATCATCAACAACGAATGAAACAACA ACAACAACAACAACGTCTTGTTTCTCTTGATGTTTTTCGTGGCCTCACCGTTGCGCTAATGATACTTGTGGATGATGCTGGTGGAGTTCTGCCCGCTATA AATCATTCACCATGGAATGGTCTAACACTAGCAGATGTAGTCATGCCATTTTTCCTATTCATGGTCGGTGTTTCGCTTGGACTCACGTACAAGAAATTGC CAAGCAAAGCTGTTGCAACTAGAAAAGCGATCCTCCGGGCACTCAAACTTCTTGTCATAGGTCTTTTTCTTCAAGGTGGCTTTCTTCACGGTCTGAATGA TCTAACTTTTGGAGTTGACATGGTACAAATAAGATGGATGGGTATCTTGCAGAGAATAGCAATAGGATATTTAATAGGAGCAATGTGTGAGATTTGGCTA AAAGGTGATAATCATGTTGCTTCAGGATTATCCATGCTGAGGAAATATCAGCTTCAATGGGGCGCGGTTGTGGTCCTTGTTAGTTTATATCTTTCCTTGT TATATGGGTTGTATGTTCCTGACTGGGAGTATGAGATTCCAGTTGCAGCCTCTTCTTCCTCCCCAAAGATCTTTCGGGTGAAATGTGGTGTCAGGGGCAC CACAGGATCTGCTTGTAATGCTGTTGGAATGATTGATCGTACAGTTTTGGGAATTCAACACCTGTATAGAAAGCCTATTTATGCACGAACGAAGGCATGC AGTATCAATTCCCCTGACTATGGCCCACTACCACCAGATGCTCCTTCATGGTGTCAGGCCCCTTTTGATCCTGAAGGACTCCTGAGTTCAGTAATGGCCA TAGTTACCTGCTTGGTTGGTTTGCATTACGGGCACATCATTGTCCATTTCAAGGAACACAAGGATAGAATCCTTCACTGGATGGTCCCTTCTACTTGTTT TGTAGTCTTGGGTCTGGTCTTGGATTTGTCAGGAATGCATGTTAACAAGGCTCTTTACACATTCAGTTACATGTGTGTCACTGCGGGTGCTGCCGGCATT GTATTTACTGGAATCTATATGCTGGTTGATGTCTGTGGATTCAGGCGCCCAACATTGGTACTAGAATGGATGGGAATGCATGCATTGATGATTTTTATCC TTGCAACTAGCAATGTCTTACCAGTTGTCATGCAGGGATTTTACTGGAAGCAGCCTGGAAACAACATTCTTAGGTTGATTGGAATTGGAAGATGA
AA sequence Show only first row Show all	>Potri.003G159200.2 pacid=42785143 polypeptide=Potri.003G159200.2.p locus=Potri.003G159200 ID=Potri.003G159200.2.v4.1 annot-version=v4.1 MAMAMTMAMYKPIKGQEEEDNGNRNKSLKSNDEDGVGGDHTIVDDSKTFILPTHSKQQHHQQRMKQQQQQQRLVSLDVFRGLTVALMILVDDAGGVLPAI NHSPWNGLTLADVVMPFFLFMVGVSLGLTYKKLPSKAVATRKAILRALKLLVIGLFLQGGFLHGLNDLTFGVDMVQIRWMGILQRIAIGYLIGAMCEIWL KGDNHVASGLSMLRKYQLQWGAVVVLVSLYLSLLYGLYVPDWEYEIPVAASSSSPKIFRVKCGVRGTTGSACNAVGMIDRTVLGIQHLYRKPIYARTKAC SINSPDYGPLPPDAPSWCQAPFDPEGLLSSVMAIVTCLVGLHYGHIIVHFKEHKDRILHWMVPSTCFVVLGLVLDLSGMHVNKALYTFSYMCVTAGAAGI VFTGIYMLVDVCGFRRPTLVLEWMGMHALMIFILATSNVLPVVMQGFYWKQPGNNILRLIGIGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47900			Protein of unknown function (D...		Potri.003G159200 [exp]	0	1
AT4G22570		APT3	adenine phosphoribosyl transfe...		Potri.001G121400 [exp]	13.11	0.7540	MTN30.1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Potri.019G039200 [exp]	74.56	0.7040	Pt-UBC1.2,HUPB903
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.010G065200 [exp]	97.14	0.7047
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.013G123800 [exp]	111.66	0.7017
AT1G04650			unknown protein		Potri.001G053000 [exp]	116.47	0.6974
AT4G34200		EDA9	embryo sac development arrest ...		Potri.001G300900 [exp]	163.63	0.6833
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	202.93	0.6669
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	248.60	0.6509

Compare expression of checked genes

Potri.003G159200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.