Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 268 / 5e-84 Plant protein of unknown function (DUF247) (.1) AT3G50140 252 / 9e-78 Plant protein of unknown function (DUF247) (.1) AT3G50170 250 / 7e-77 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50150 247 / 3e-76 Plant protein of unknown function (DUF247) (.1) AT3G50130 244 / 1e-74 Plant protein of unknown function (DUF247) (.1) AT3G50160 240 / 1e-73 Plant protein of unknown function (DUF247) (.1) AT3G50190 226 / 2e-68 Plant protein of unknown function (DUF247) (.1) AT3G50180 219 / 1e-64 Plant protein of unknown function (DUF247) (.1) AT5G22540 194 / 8e-57 Plant protein of unknown function (DUF247) (.1) AT2G36430 190 / 5e-55 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071400 [exp] 650 / 0 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.003G159400 [exp] 597 / 0 AT3G50120 294 / 1e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G071300 [exp] 596 / 0 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.001G071200 [exp] 575 / 0 AT3G50120 244 / 1e-74 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 254 / 8e-79 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 204 / 2e-60 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 194 / 1e-56 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 192 / 3e-56 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 192 / 9e-56 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 503 / 2e-176 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 266 / 2e-83 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 194 / 1e-56 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 184 / 7e-53 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 177 / 8e-50 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 177 / 9e-50 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 173 / 8e-49 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10018320 [exp] 166 / 1e-45 AT3G50120 210 / 2e-61 Plant protein of unknown function (DUF247) (.1) Lus10005799 [exp] 155 / 6e-45 AT3G50150 61 / 3e-11 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 159 / 2e-43 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G159300.1 pacid=42787160 polypeptide=Potri.003G159300.1.p locus=Potri.003G159300 ID=Potri.003G159300.1.v4.1 annot-version=v4.1 ATGGAAGAGGAAAAGCAGGTGCTTATAAAAGTTGTTACAGAAAAACTTCAGAACATGGCAAATACTTCAATGAAGAATGTGCTCTGGAGCAAACGTTCAA TCTACAGAATACCTGCCTCTGTTACAGCCCATAACGAGACAGCTTACATGCCCCAGACAGTCTCCTTCGGTCCTTACCATCATGATGACATTCATCTGAA GCCAATGGAGGAACACAAGCAACGAGCACTCGTGTATTTTCTAAATAAAACAGGAATACCTCTACAGTCGGTCGTTGAATCTTTAAATGAAGAAATGCAG GTTTTAAAAGACTCATATGATATGCTTGGTGAATCATGGAAAAATGATACGAGCAAATTTCTGCAAATGATGATTCTTGACGGTTGTTTCATGCTGGAAA TCATACGCCTTGCTACACATAATTCGTTGGACTACTCTGCCGATGACCCCGTTTTTAGCAGCCACGGGAGGCTCTACATGATACCACATATCCGGCGTGA CATGTTGTTGCTTGAAAATCAACTGCCAATGCTTGTTCTTTACAGGTTGGTTGCCGTTGAAAGCGACGGAGCAAAGGATGAAGAGTCGGTCAACGAGCTC ATACACAATTTCTTCCATCCCAATGCATCGGTCTCAAGTCTGGATAAATGCTTGCATGTATTGGATTTGTATAGGAAGAGCCTTCTTCAGGGAGATCCCA TCAAGAAAATGCGTCGCCCCCGAGTAAAGGGAGGACTTCATGGGGATGACAACGATATTATACGATCAGCGACAGAGATTAATGAAGCTGGAATCCAGTT CAAGAAAAGTAAAATTAAGAGCCTGAAAGAAATCTCATTACATCGTGGGGTCCTAGAGCTTCCTGTCATTGAGGTAGATGATACCACCGAGGCAACCTTT CTGAATCTGATGGCCTTTGAGCGCTTCCATGTTGGTGCAAGCAATGAGGTAACATCTTATGTCTTCTTCATGGACAGTATCATTGACAATGAGAGGGACG TTGCCCTCCTAAACTCGAGAGGAATTATCCAGAACGCTATTGGAAGTGACAAAGCTGTCGCTAAACTGTTCAACTCTCTCTCTAAGGACATTGCGTTGGA ATCCAACAGCAACCTCCAAGTGGTGCAAATGCATGTCAATGCTTACTGCAAGAAGCCTTGGAATGCGTGGCGTGCCAATCTCATTCACACCTATTTCAGA AATCCTTGGGCTATTCTGTCTGTTATTGCTGCACTCATCCTCTTTGCCCTCACTATTGCTCAAACTGTATATTCTATATTACCTTACTACAACTCAAATA ACTCTACATCGCTCTCTCCTCCTATGATTTTTGCGGCTCCCCCTCCCCTTTCAACTCCCCCTCCCACTCCTCCTCCTATTCATCCTCCAAAACTATCACG CCGCCATTGA
AA sequence Show only first row Show all	>Potri.003G159300.1 pacid=42787160 polypeptide=Potri.003G159300.1.p locus=Potri.003G159300 ID=Potri.003G159300.1.v4.1 annot-version=v4.1 MEEEKQVLIKVVTEKLQNMANTSMKNVLWSKRSIYRIPASVTAHNETAYMPQTVSFGPYHHDDIHLKPMEEHKQRALVYFLNKTGIPLQSVVESLNEEMQ VLKDSYDMLGESWKNDTSKFLQMMILDGCFMLEIIRLATHNSLDYSADDPVFSSHGRLYMIPHIRRDMLLLENQLPMLVLYRLVAVESDGAKDEESVNEL IHNFFHPNASVSSLDKCLHVLDLYRKSLLQGDPIKKMRRPRVKGGLHGDDNDIIRSATEINEAGIQFKKSKIKSLKEISLHRGVLELPVIEVDDTTEATF LNLMAFERFHVGASNEVTSYVFFMDSIIDNERDVALLNSRGIIQNAIGSDKAVAKLFNSLSKDIALESNSNLQVVQMHVNAYCKKPWNAWRANLIHTYFR NPWAILSVIAALILFALTIAQTVYSILPYYNSNNSTSLSPPMIFAAPPPLSTPPPTPPPIHPPKLSRRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.003G159300 [exp]	0	1
AT4G39700			Heavy metal transport/detoxifi...		Potri.007G087300 [exp]	2.23	0.9483
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.005G122700 [exp]	2.44	0.9594
AT4G22010		SKS4	SKU5 similar 4 (.1)		Potri.014G154500 [exp]	3.16	0.9435
AT3G15800			Glycosyl hydrolase superfamily...		Potri.003G032600 [exp]	4.24	0.9663
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.007G024500 [exp]	6.92	0.9262	Pt-MNP.1
AT1G70280			NHL domain-containing protein ...		Potri.016G092200 [exp]	7.74	0.9475
AT5G42570			B-cell receptor-associated 31-...		Potri.011G089100 [exp]	7.93	0.9473
AT5G20870			O-Glycosyl hydrolases family 1...		Potri.006G216700 [exp]	9.16	0.9497
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.016G028700 [exp]	10.39	0.9238
AT2G01080			Late embryogenesis abundant (L...		Potri.001G163800 [exp]	10.81	0.9455

Compare expression of checked genes

Potri.003G159300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.