Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50120 295 / 1e-94 Plant protein of unknown function (DUF247) (.1) AT3G50150 281 / 8e-90 Plant protein of unknown function (DUF247) (.1) AT3G50170 282 / 1e-89 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 270 / 6e-85 Plant protein of unknown function (DUF247) (.1) AT3G50180 257 / 1e-79 Plant protein of unknown function (DUF247) (.1) AT3G50160 254 / 1e-79 Plant protein of unknown function (DUF247) (.1) AT3G50130 256 / 3e-79 Plant protein of unknown function (DUF247) (.1) AT3G50190 244 / 1e-75 Plant protein of unknown function (DUF247) (.1) AT2G36430 214 / 1e-64 Plant protein of unknown function (DUF247) (.1) AT3G47200 205 / 9e-61 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071300 [exp] 765 / 0 AT3G50120 293 / 7e-94 Plant protein of unknown function (DUF247) (.1) Potri.003G159300 [exp] 644 / 0 AT3G50120 268 / 6e-84 Plant protein of unknown function (DUF247) (.1) Potri.001G071400 [exp] 631 / 0 AT3G50120 292 / 3e-93 Plant protein of unknown function (DUF247) (.1) Potri.001G071200 [exp] 542 / 0 AT3G50120 244 / 1e-74 Plant protein of unknown function (DUF247) (.1) Potri.007G047700 [exp] 278 / 3e-88 AT3G50120 721 / 0.0 Plant protein of unknown function (DUF247) (.1) Potri.007G013800 [exp] 229 / 3e-70 AT2G36430 508 / 3e-179 Plant protein of unknown function (DUF247) (.1) Potri.004G187100 [exp] 225 / 1e-68 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 222 / 1e-67 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.003G181600 [exp] 220 / 2e-67 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006802 [exp] 531 / 0 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10011501 [exp] 278 / 2e-88 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 214 / 3e-64 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 213 / 7e-64 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 206 / 2e-61 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 194 / 5e-57 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 192 / 2e-56 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10027719 [exp] 179 / 2e-51 AT2G36430 424 / 5e-146 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 172 / 1e-48 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 172 / 2e-48 AT4G31980 251 / 5e-76 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.003G159400.1 pacid=42786253 polypeptide=Potri.003G159400.1.p locus=Potri.003G159400 ID=Potri.003G159400.1.v4.1 annot-version=v4.1 ATGGCGGAAGTGCAATTGCTGATTGATGTTACAAAAGAACTACAGAATAAGTTGGATACTTCGATGCAGAACATCCTATGGAACAAACGATCAATCTACA AAGTACCTGCATCTGTCACAGTTCTTAACAAAGCAGCGTATAGGCCCCAGACAGTATCCCTTGGGCCTTACCATTACTATGACGATCAGCTAAAGCGAAT GGAAGAGCACAAACACCGAGCTCTTCATTATTTTCTAGAGAGGTCAGGAAAATCTCTAGAGCTGTTTCTCCAATCCTTAAATGAAGTGGTGCAGGATTTA AAGGATTCGTATGATCAACTTGATAAATCATGGAAAGATGATACGAGCAAGTTCTTGCAATTGATGATTCTTGATGGCTGTTTCATGGTGGAAATTATGC GCGTTGCTATTCAACCTTCCAATAACTATGCTGCTGATGATCCAATTTTTAGCAGCCATGGGAGGGTCTATACGGTGCCATTTATCAAGCGTGACATGTT GATTGTTGAAAATCAATTACCAATGCTTGTTCTGTACAAGCTTGTTGCTGTTGAAAGTGATGGGACAAAGGATGAAGAGTTCGTCAACAAGCTCGTACTC ACTTTCTGTAATGATCCCGATGCAAGTGTCTTAAAGTTGGGTAAATGCTTGCATGTGTTGGATTTATATAGGAAGAGCCTGATTCAGAAAGACCCCAACC GGAAAAGGCATCAACCCAGAGTAAGGGGTGGACTACATAAAGATGCCAATGATATTGTTCGGTCTGCAGCAGAGATCAATGAAGCTGGAATCAGGTTCAA GAAAAGTAAAACTAAAAGCCTAAAAGACATTTCGTTCCACCATGGGGTCCTTGAGCTTCCTGCCGTCGTGGTGGACGATGTAACTGAGGCACTCCTTTTG AATTTGATGGCCTTCGAACGCTTCCATGTTGGTGCAGGAAACGAGGTTACTTCTTATGTCTTCTTCATGGACAACATCATTGACAATGAGAGGGATGTTT CTCTCCTACACTCAAGAGGGATCATCCAGAACGCCATCGGAAGTGATAAAGCTGTTGCTAAACTGTTCAACTCTCTTTCCAAGGACATTGCACTGGACCC AGACAGCAGCCTAGAATTGGTGCAAAGGCAGGTCAATGCCTACTGCAAGAAGCCTTGGAATGCCTGGCGTGCCAACCTAATCCAAACCTATTTCAGAAAT CCATGGGCGATCCTATCTATTGTTGCTGCACTCATCCTCTTCGCGCTCACAATTGTTCAGACTGTATATACTATATTACCTACTGCAACGCCTTCCTCCT GA
AA sequence Show only first row Show all	>Potri.003G159400.1 pacid=42786253 polypeptide=Potri.003G159400.1.p locus=Potri.003G159400 ID=Potri.003G159400.1.v4.1 annot-version=v4.1 MAEVQLLIDVTKELQNKLDTSMQNILWNKRSIYKVPASVTVLNKAAYRPQTVSLGPYHYYDDQLKRMEEHKHRALHYFLERSGKSLELFLQSLNEVVQDL KDSYDQLDKSWKDDTSKFLQLMILDGCFMVEIMRVAIQPSNNYAADDPIFSSHGRVYTVPFIKRDMLIVENQLPMLVLYKLVAVESDGTKDEEFVNKLVL TFCNDPDASVLKLGKCLHVLDLYRKSLIQKDPNRKRHQPRVRGGLHKDANDIVRSAAEINEAGIRFKKSKTKSLKDISFHHGVLELPAVVVDDVTEALLL NLMAFERFHVGAGNEVTSYVFFMDNIIDNERDVSLLHSRGIIQNAIGSDKAVAKLFNSLSKDIALDPDSSLELVQRQVNAYCKKPWNAWRANLIQTYFRN PWAILSIVAALILFALTIVQTVYTILPTATPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50120			Plant protein of unknown funct...		Potri.003G159400 [exp]	0	1
AT5G35810			Ankyrin repeat family protein ...		Potri.004G003401 [exp]	1.00	0.9615
					Potri.012G021500 [exp]	1.41	0.9436
AT5G38895			RING/U-box superfamily protein...		Potri.010G140300 [exp]	3.46	0.9094
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120800 [exp]	7.34	0.9339
AT1G03730			unknown protein		Potri.013G130300 [exp]	15.16	0.8058
AT3G55140			Pectin lyase-like superfamily ...		Potri.008G048600 [exp]	16.24	0.8292
AT3G19660			unknown protein		Potri.004G105900 [exp]	19.59	0.8390
AT5G35740			Carbohydrate-binding X8 domain...		Potri.006G016800 [exp]	23.87	0.9103
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.004G044700 [exp]	26.22	0.8749
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.001G172700 [exp]	27.74	0.8923

Compare expression of checked genes

Potri.003G159400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.