Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) AT2G28890 265 / 7e-81 PLL4 poltergeist like 4 (.1) AT1G07630 259 / 2e-78 PLL5 pol-like 5 (.1) AT3G09400 253 / 2e-76 PLL3 pol-like 3 (.1.2) AT5G02400 250 / 5e-75 PLL2 pol-like 2 (.1) AT2G46920 208 / 1e-58 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 199 / 1e-55 PLL1 poltergeist like 1 (.1) AT3G51370 144 / 5e-39 Protein phosphatase 2C family protein (.1.2) AT3G12620 145 / 1e-38 Protein phosphatase 2C family protein (.1.2) AT4G38520 144 / 3e-38 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G207700 [exp] 496 / 6e-172 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 465 / 5e-160 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.006G085000 [exp] 267 / 2e-81 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.003G089500 [exp] 214 / 8e-61 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 211 / 9e-60 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.001G239300 [exp] 208 / 5e-59 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.009G030600 [exp] 206 / 2e-58 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.002G185000 [exp] 179 / 4e-48 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 172 / 5e-46 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004793 [exp] 485 / 6e-168 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 483 / 4e-167 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10040823 [exp] 265 / 8e-80 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 259 / 8e-78 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 252 / 3e-76 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10025348 [exp] 249 / 4e-75 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10004554 [exp] 205 / 2e-57 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10000896 [exp] 203 / 2e-57 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10024008 [exp] 152 / 9e-41 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 151 / 1e-40 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.003G159600.1 pacid=42785431 polypeptide=Potri.003G159600.1.p locus=Potri.003G159600 ID=Potri.003G159600.1.v4.1 annot-version=v4.1 ATGATGATGGAAGGATCGGATGATGCACCTGAATATTCAAGGGAACTAAGTGTTAGTTTTGGTTATCAGTGCAATGTCACTGGCCCTAGGATTCCTTCCA TTGTGCCAGAGGGATTCGACATTTTGAACAGCACCATGATCCAAGATTCTTGTATGAAGATGAGTAGCTCCTTTTCGTGTTTGTCTGGTGCTGCTCTTAG TGCCAATGCTACTTTGGCAAACACAAATCTGTGTAATGGTCTCATTGGAGAGGAGATCTTGCCTAACCTTGATTCTCCAAAATCATTTAGAAGGATGGCA TCTTCTCCTTCTCTATCACGCTTAGATTTCACATCATCATCCTCATATAGCAGCTTCACCTCCTTGGGTGGTAGTACACCGAAGGATAAGGACTTTGCTG AGACCTTGTGGAAATCTATGAGTGCTCCTACCAGAACAGAATCCTCGACCTTTCTCAATACAATGGAAGTGCAAATGGCTGGAGGGGCTGCAGGCGAGGA TAGAGTCCAAGCTGTGTGTTCTGAAGAAAATGGATGGCTCTTCTGTGGAATCTATGATGGATTTAATGGGCGTGATGCAGCTGATTTCTTAGCTGGTACT CTCTATGAAAACATCTGTTTTTACCTGCATATGCTGGAGTGGAACAAAAAGAAGCAGCCTGGTTCGTTTAAAAGTACCTTAGAAGGTGAAAATGTCACAT TGCATATTGCCCTCCCCGATGATCCTGGCCATTCAAATTCTGAAATGGAACAAGCAAAACTACCCAATTATGTTGATGAAGAATTCACGCATGAGAATTA CAGCTCTGACATAATAAGCTGCCTTAATCGTGCCCTAGCCCAAGCAGAAGGTGATTTTATGTACATGGTTGAGCAGGAAATGGAAGATCGTCCTGATTTG GTGTCTGTTGGATCTTGTGTCTTGGCAATTCTTCTTTATGGAGATCATATCTATGTCCAAAATTTAGGGGATAGTAGGGCAATATTAGCAACAAGCACCA TTCAAGAGGAAGGGGTGCTGAAAGCCATCCAGTTAACAGAAACTCATACTGTTGATAACGAGTCAGAGTGCAATAAAGTTTTGGCCGATCACCCTGATGA TCCATCTCCTATCATCTATGGGAGAGTAAAAGGGAAACTGAAGTTAACTCGAGCATTTGGAGTTGGTTATCTTAAAAAGAGTAAAATGAATGATGTGTTG ATGGGCATTCTACGAGTTCGAAATTTGTGCAGTCCTCCCTATGTTTATAATCATCCCTTCACTATGAGTCATAGAGTTTCAGACAAGGATCAATTTGTTG TTTTGGGAAGTGATGGATTGTTTGATTTCTTTAGCAATGATGAAGTTGTGAAGCTTGTGCATCTCTTTATCCAGAACAATCCTTCTGGTGATCCTGCAAA GCACCTGGTTGAACAGCTTGTTCAGAGAGCAGCTGATAATGCTGGTTTTAGCACTGAAGATCTGATGAGTATTCCAGCTGGGAGAAGAAGGAAATATCAT GACGATGTTACCGTGCTCGTAGTTATACTCGGTAATAAACAACGGACTTCTGCTGCTTCTGCATATCTATAG
AA sequence Show only first row Show all	>Potri.003G159600.1 pacid=42785431 polypeptide=Potri.003G159600.1.p locus=Potri.003G159600 ID=Potri.003G159600.1.v4.1 annot-version=v4.1 MMMEGSDDAPEYSRELSVSFGYQCNVTGPRIPSIVPEGFDILNSTMIQDSCMKMSSSFSCLSGAALSANATLANTNLCNGLIGEEILPNLDSPKSFRRMA SSPSLSRLDFTSSSSYSSFTSLGGSTPKDKDFAETLWKSMSAPTRTESSTFLNTMEVQMAGGAAGEDRVQAVCSEENGWLFCGIYDGFNGRDAADFLAGT LYENICFYLHMLEWNKKKQPGSFKSTLEGENVTLHIALPDDPGHSNSEMEQAKLPNYVDEEFTHENYSSDIISCLNRALAQAEGDFMYMVEQEMEDRPDL VSVGSCVLAILLYGDHIYVQNLGDSRAILATSTIQEEGVLKAIQLTETHTVDNESECNKVLADHPDDPSPIIYGRVKGKLKLTRAFGVGYLKKSKMNDVL MGILRVRNLCSPPYVYNHPFTMSHRVSDKDQFVVLGSDGLFDFFSNDEVVKLVHLFIQNNPSGDPAKHLVEQLVQRAADNAGFSTEDLMSIPAGRRRKYH DDVTVLVVILGNKQRTSAASAYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16560			Protein phosphatase 2C family ...		Potri.003G159600 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	2.00	0.8239
AT1G12150			Plant protein of unknown funct...		Potri.006G004100 [exp]	9.48	0.7996
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.006G003000 [exp]	11.48	0.7918
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	13.96	0.7867
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Potri.006G036400 [exp]	15.55	0.7769
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.004G179100 [exp]	27.27	0.8068
AT1G61470			Polynucleotidyl transferase, r...		Potri.018G038700 [exp]	30.33	0.8217
AT5G19930			Protein of unknown function DU...		Potri.018G073000 [exp]	30.98	0.7532
					Potri.005G053150 [exp]	38.18	0.7653
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.012G139000 [exp]	46.43	0.7449	EMS1.2

Compare expression of checked genes

Potri.003G159600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.