Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47910 1300 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 1155 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT5G07390 1043 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 1006 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G09090 998 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT1G64060 920 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT1G19230 805 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT4G11230 796 / 0 Riboflavin synthase-like superfamily protein (.1) AT5G60010 751 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 708 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070900 [exp] 1574 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 1261 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 1251 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.005G026200 [exp] 1132 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G133300 [exp] 933 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 924 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 844 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 741 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 712 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043017 [exp] 1259 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 1234 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10029896 [exp] 1136 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10020644 [exp] 1044 / 0 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10032517 [exp] 1017 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032308 [exp] 920 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10017527 [exp] 897 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 882 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 846 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 833 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF01794 [poplar] [flax] Ferric_reduct Ferric reductase like transmembrane component CL0076 [poplar] [flax] FAD_Lum_binding PF08022 [poplar] [flax] FAD_binding_8 FAD-binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF08030 [poplar] [flax] NAD_binding_6 Ferric reductase NAD binding domain CL0220 [poplar] [flax] EF_hand PF08414 [poplar] [flax] NADPH_Ox Respiratory burst NADPH oxidase
Representative CDS sequence Show only first row Show all	>Potri.003G159800.1 pacid=42784926 polypeptide=Potri.003G159800.1.p locus=Potri.003G159800 ID=Potri.003G159800.1.v4.1 annot-version=v4.1 ATGATCAGAGGCGAGGACTCGAGGGGTGCTTATTCTGAGAACAACTCGGACACAGAAAGCATAGCAAGCGACAGAACAGCTTTTAGTGGGCCATTAGGAT CAGGAGGAGGAGGAGCTCTCAATAAAAAACGTTCTTCAAGGAAGAGCGCGAGGTTCAATATTCCTACTGAAACCGTTATAAATTCCGGTGTTCCTGATGA TCCATCTTCCTATGTAGAGATTACTTTGGATATTCGTGAAGATTCTGTGGCAGTTCACAGCGTTCAAGGAGCTAATGAGGATCCCGAATTGACTCTGCTG GCGAAGACTGCGCTGGAGGGTAACAATTCCTCTTCGCTGCGGTCTTCGCTGTTTAGGAACACATCATCCAGAATCAGACAGGTCTCTCAGGAGCTAAAAC GTTTTGCTTCTTTATCAAGAAGGACATCTACTAGACGGTTTGATAGGAATAAGTCAGCTGCTGCTCATGCCTTGAAGGGACTTAAGTTCATTACCACCAA AACTGGAAATGGATGGCCTGCTGTTGAGAAGCGATTTCAAGGACTTACTGCTTCTACCAGTGGCCTACTTCCCTGTTCCTTGTTTGGAGAATGCATTGGT ATGAACAAGGACTCTAAGGAATTTGCCGGAGAATTATTTCGTGCACTTGCTCGGAGACATAACATAAATAGTGATTTAATTAACAAGGCACAGCTTAGAC AATTCTGGGATCAAATTTCCGATGAAAGCTTTGACTCCAGGCTCCAGATCTTCTTTGACATGGTTGATAAAGATGCTGATGGAAGAATAGCAGAAGAGGA AGTTTTGGAAATTATCACTCTAAGTGCTTCTGCAAACAAGCTTTCCAACATTCAGAAACAAGCCAAGGAGTATGCAGCACTAATCATGGAAGAATTAGAC CCAGATAATGCTGGATATATCATGATTTATAACTTGGAAACACTATTATTGCAAGCTCCAAACCAAACCGTCAGAGTTGGAGATAGCAAAGTTCTGAGTC AATTATTGAGCCAAAAGCTGAAGCCCACACAAGAAAACAATCCATTAAAGAGATGGTACCAAAAGATGAAGTACTTTTTGATGGATAATTGGCAGAGAGT TTGGATAATGATGTTGTGGATGGGAATCGTCGCTGGTTTATTTACTTACAAGTTCATACAATATCGGCACAAGGCCGCATATGATGTGATGGGTTATTGC GTTTGTGTTGCCAAAGGAGGGGCAGAGACCCTTAAATTCAATATGGCCTTGATTTTACTACCAGTCTGCCGGAATACCATTACTTGGCTCAGAAACAAGA CCAAATTGGGTGTTGCTGTGCCTTTTGATGACAATCTGAATTTCCACAAGGTTATTGCAGTAGGAATTGCCATTGGAATTGGATTGCATGCAGGGGCTCA TTTAACGTGTGATTTTCCACGACTTATTCATGCCACTGAAGAAGAATACGAGCCTATGAAACCTTACTTTGGAGATGATCAGCCTGAAAACTACTGGTGG TTTTTGAAAGGTGTGGAGGGGATCACAGGCGTTGTAATGGTAGTGCTAATGGCCATAGCATTCACATTAGCCACGCCTTGGTTTCGGCGTAACAGAATCA ACCTGCCTAAACCTCTCAAGAAACTCACTGGCTTCAATGCGTTCTGGTATTCCCACCATCTGTTCGTTATTGTCTACACTCTCCTTGTTGTCCATGGAAT TTACCTCTACCTCACAAAGACATGGTATCATAAAACGACATGGATGTATCTAGCAGTGCCGGTTATTCTTTATGCATGTGAAAGGTTGATCAGGGCTTTC AGATCAAGCATCAGAGCCGTTAAGATCCTCAAGGTTGCCGTCTATCCGGGAAACGTCCTGGCATTGCACATGTCAAAGCCCCAAGGATTCAAATACAAGA GTGGGCAGTACATGTTTGTCAACTGCGCTGCAGTTTCTCCCTTTGAATGGCACCCATTTTCTATCACTTCAGCACCAGGAGATGACTACCTAAGCGTGCA CATTCGAACACTCGGTGATTGGACGAGGCAACTCAAAACTGTTTTCTCTGAGGTTTGCCAGCCTCCGACTGCTGGGAAGAGTGGATTGCTCAGAGCTGAT ATGCAAGGAGGAAACAATCCTAGCATTCCCAAGATATTAGTTGATGGTCCATTTGGAGCTCCGGCACAAGACTACAAGAAGTATGATGTGGTGCTACTAG TAGGGCTTGGCATCGGAGCCACACCTATGATCAGCATAGTCAAGGACATTATCAACAACATGAAAATCAAGGATAAGGATGAAGGGAATAATGGAGCCTT GGATGCGTTGGAAAGTGGCAGAGCCACGCCTAATAAGAACAACAAGATTAATAGCAAAAGTTTCAAAACAAGAAAAGCATACTTCTATTGGGTCACAAGG GAACAGGGTTCCTTTGAGTGGTTCAAAGGGATAATGAATGAGGTGGCAGAGATGGATGACAAGCAGGTGATAGAATTGCACAACTACTGCACAAGTGTTT ATGAAGAAGGCGATGCAAGGTCAGCTCTCATTGCCATGCTCCAGTCGCTACACCATGCCAAGAGCGGCGTGGATGTGGTTTCAGGCACACGGGTCAAATC CCACTTTGCCAAACCCAACTGGCGACAAGTCTACAAGAAGATCGCCCTTCAGCATCCAGATTCTCGAATTGGAGTTTTCTACTGTGGGGCACCAGCACTC ACGAAGGAGCTAAGGCAATTAGCTCTAGACTTCTCTCGCAAGACCTCTACAAAGTTCGATTTTCATAAAGAGAACTTTTAA
AA sequence Show only first row Show all	>Potri.003G159800.1 pacid=42784926 polypeptide=Potri.003G159800.1.p locus=Potri.003G159800 ID=Potri.003G159800.1.v4.1 annot-version=v4.1 MIRGEDSRGAYSENNSDTESIASDRTAFSGPLGSGGGGALNKKRSSRKSARFNIPTETVINSGVPDDPSSYVEITLDIREDSVAVHSVQGANEDPELTLL AKTALEGNNSSSLRSSLFRNTSSRIRQVSQELKRFASLSRRTSTRRFDRNKSAAAHALKGLKFITTKTGNGWPAVEKRFQGLTASTSGLLPCSLFGECIG MNKDSKEFAGELFRALARRHNINSDLINKAQLRQFWDQISDESFDSRLQIFFDMVDKDADGRIAEEEVLEIITLSASANKLSNIQKQAKEYAALIMEELD PDNAGYIMIYNLETLLLQAPNQTVRVGDSKVLSQLLSQKLKPTQENNPLKRWYQKMKYFLMDNWQRVWIMMLWMGIVAGLFTYKFIQYRHKAAYDVMGYC VCVAKGGAETLKFNMALILLPVCRNTITWLRNKTKLGVAVPFDDNLNFHKVIAVGIAIGIGLHAGAHLTCDFPRLIHATEEEYEPMKPYFGDDQPENYWW FLKGVEGITGVVMVVLMAIAFTLATPWFRRNRINLPKPLKKLTGFNAFWYSHHLFVIVYTLLVVHGIYLYLTKTWYHKTTWMYLAVPVILYACERLIRAF RSSIRAVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTRQLKTVFSEVCQPPTAGKSGLLRAD MQGGNNPSIPKILVDGPFGAPAQDYKKYDVVLLVGLGIGATPMISIVKDIINNMKIKDKDEGNNGALDALESGRATPNKNNKINSKSFKTRKAYFYWVTR EQGSFEWFKGIMNEVAEMDDKQVIELHNYCTSVYEEGDARSALIAMLQSLHHAKSGVDVVSGTRVKSHFAKPNWRQVYKKIALQHPDSRIGVFYCGAPAL TKELRQLALDFSRKTSTKFDFHKENF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Potri.003G159800 [exp]	0	1
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	1.41	0.9572
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.014G117000 [exp]	1.41	0.9509	Pt-MYB.47
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.002G191800 [exp]	4.58	0.9477
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.001G298300 [exp]	5.91	0.9386	3
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088800 [exp]	8.12	0.9371
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	8.48	0.9445
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014328 [exp]	8.94	0.9093
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.001G044500 [exp]	9.21	0.9203	Pt-WRKY40.1
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	9.94	0.9348	Pt-ACA2.1
AT1G05340			unknown protein		Potri.006G021600 [exp]	9.94	0.9006

Compare expression of checked genes

Potri.003G159800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.