Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28190 168 / 5e-51 unknown protein AT5G12340 110 / 2e-29 unknown protein AT4G37240 53 / 2e-08 unknown protein AT5G66580 47 / 2e-06 unknown protein AT1G18290 47 / 3e-06 unknown protein AT2G23690 46 / 5e-06 unknown protein AT3G50800 44 / 2e-05 unknown protein AT1G76600 44 / 3e-05 unknown protein AT1G21010 44 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070700 [exp] 441 / 2e-158 AT1G28190 150 / 2e-44 unknown protein Potri.001G276400 [exp] 101 / 6e-26 AT5G12340 191 / 2e-61 unknown protein Potri.009G071100 [exp] 96 / 6e-24 AT5G12340 187 / 4e-60 unknown protein Potri.012G045600 [exp] 74 / 7e-16 AT1G18290 129 / 1e-38 unknown protein Potri.015G036800 [exp] 73 / 9e-16 AT1G18290 122 / 1e-35 unknown protein Potri.004G149600 [exp] 59 / 2e-10 AT4G37240 125 / 5e-37 unknown protein Potri.010G116000 [exp] 54 / 1e-08 AT3G03280 131 / 4e-39 unknown protein Potri.008G127200 [exp] 53 / 2e-08 AT3G03280 127 / 2e-37 unknown protein Potri.009G110700 [exp] 53 / 2e-08 AT5G66580 77 / 2e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036031 [exp] 102 / 5e-26 AT5G12340 192 / 1e-61 unknown protein Lus10009698 [exp] 57 / 1e-09 AT5G12340 109 / 1e-29 unknown protein Lus10035268 [exp] 51 / 2e-07 AT5G17350 116 / 4e-33 unknown protein Lus10012442 [exp] 44 / 3e-05 AT1G76600 152 / 2e-46 unknown protein Lus10010014 [exp] 43 / 0.0001 AT4G02090 127 / 2e-36 unknown protein Lus10016785 [exp] 42 / 0.0001 AT2G23690 138 / 4e-42 unknown protein Lus10009561 [exp] 42 / 0.0002 AT1G06980 44 / 1e-05 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.003G160000.1 pacid=42786693 polypeptide=Potri.003G160000.1.p locus=Potri.003G160000 ID=Potri.003G160000.1.v4.1 annot-version=v4.1 ATGGGTATAAGGTTTTTGAATCTGCAAATGATTCCATGGTGTTTTCATAATTTGATGGGCAATCCTACATCATGCTTGCAACTCCAGTCTGAGCCACCGG CAGGTACAATCAAGCTTATAAAATCAGATGGGCTAGTGAAGATCTATGACAGACCAGTCTATGTCTCAGAGCTAATGGTAGAGTTTCCAAAACACCTGGT TTGCCATTCAGATTCATTCTATATAGGTCAAAAGATCCCAGCTCTTTCTGAGAACGACCAGCTTCAATTAGGCCACAAGTACTTTCTTCTACCCAAAGAT TGCTTCCAATCTGTACTGTCTTTTGTCACTATAGCTTCCTTTACCAGCTCCTCACTACAGCCTCAACCATCATCTTCAAGAAATGCGTTTCTAAAAAAGG CTGCTACTTGCCAACCTTTTGATATTCAAAAATCTCCGAATGGGTGTTTGAGGATACGTGTATCGGATGATTTTATATCACAATTAATGGAGGAAGGTAA AGTCAAGGAGAGTGGAGAAGATGAGAGTTCAGGGAATTGTAAACCAAAGAGTAGAGTTTGCACTACTCCTCAGTTGGAGAAAGATTACACGCAGCTTGTC GGGTCACGCCAATGGAAACCGAAGTTGGAGACAATAAAGGAGAACGAAAAGAGAAGACTTTCTTCCTCCTTTGGAATGAAGAGGAGGAAGAAATCTCAGT CTAAAGTGACACAAAAGAGTACTCATAGATCAGTCTCAGAACAACACCTTCACTCAACATCTACCAGTCATAACAAGTCTTCTCTAAAGGCCAAGATCAA GATTAAACCAAGAAAGTGA
AA sequence Show only first row Show all	>Potri.003G160000.1 pacid=42786693 polypeptide=Potri.003G160000.1.p locus=Potri.003G160000 ID=Potri.003G160000.1.v4.1 annot-version=v4.1 MGIRFLNLQMIPWCFHNLMGNPTSCLQLQSEPPAGTIKLIKSDGLVKIYDRPVYVSELMVEFPKHLVCHSDSFYIGQKIPALSENDQLQLGHKYFLLPKD CFQSVLSFVTIASFTSSSLQPQPSSSRNAFLKKAATCQPFDIQKSPNGCLRIRVSDDFISQLMEEGKVKESGEDESSGNCKPKSRVCTTPQLEKDYTQLV GSRQWKPKLETIKENEKRRLSSSFGMKRRKKSQSKVTQKSTHRSVSEQHLHSTSTSHNKSSLKAKIKIKPRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28190			unknown protein		Potri.003G160000 [exp]	0	1
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Potri.007G047400 [exp]	1.41	0.8871	WRKY15.1
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Potri.008G101400 [exp]	3.16	0.8732	MYB108.2
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	4.35	0.8903
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.002G039100 [exp]	5.29	0.8352
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.016G128300 [exp]	8.66	0.8791	WRKY33.1
AT3G50900			unknown protein		Potri.007G022300 [exp]	9.59	0.8743
					Potri.014G022300 [exp]	9.74	0.8384
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G119400 [exp]	10.39	0.8523
AT1G43910			P-loop containing nucleoside t...		Potri.005G119200 [exp]	13.22	0.8664
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	17.74	0.8631	ATL2.3

Compare expression of checked genes

Potri.003G160000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.