Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18750 403 / 2e-129 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 392 / 5e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 379 / 4e-122 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 374 / 8e-119 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 363 / 2e-115 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 364 / 4e-115 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 359 / 1e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 366 / 3e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 359 / 4e-114 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15510 362 / 5e-114 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G059400 [exp] 431 / 4e-140 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 415 / 2e-136 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G152000 [exp] 389 / 2e-125 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.003G191000 [exp] 388 / 3e-124 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 384 / 5e-124 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 383 / 6e-124 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 384 / 1e-123 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 377 / 1e-121 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 377 / 2e-120 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015225 [exp] 416 / 4e-134 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 413 / 7e-134 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 388 / 1e-125 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 371 / 3e-117 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 371 / 2e-116 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 368 / 6e-116 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014211 [exp] 359 / 2e-115 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038741 [exp] 358 / 3e-114 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 357 / 4e-114 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 364 / 7e-114 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G160100.1 pacid=42785903 polypeptide=Potri.003G160100.1.p locus=Potri.003G160100 ID=Potri.003G160100.1.v4.1 annot-version=v4.1 ATGGATGTTCTTTCATTAACACGGATGCCCAGTTTTCTAAAACCCGAAATACCTAATTGCACCTCACAATGCAAGCGTTCCCTTGGTCACAGTAGCCATG TAAGGGTGAGTACGAGATTTCATAGGCAGTTAGCATTGACCCACAAAGTGCTCGATGAAATTCCACTGTCAGATACTTTTGCTTGGAATAATCTTATTCA CACTCATTTGAGTAATAGAGACCCGGGTGGTGCATTGTCAATTTATCATCACATGATGATGCGTGGTGCCTGTCCTGATCGCCGCACCCTTCCTCGTGTT TTGACCGCGTCTCGGATTTGTGGTGATCTGTTTCTTGGCAAACAGCTTCATGGGCAGGCTATTAAACTTGGGTTCTTCGACGAACATTATGTTATTACAG CGTTGATTGAAATCTATGGTCGTCTTGATGGCATTGAAGCGGGAAAATGGTTGTTTGATAAATCTCCTAGAAGGAATTCTGTTGCTTGGACTATGATACT TAAGTTGTACCTAATGGAAAATAAGCCTGATTTAGCAATCAATGTGTTTTATCAGATGGTGGAGTTGAATGCGCGGATTGATTCAGTGGTGTTAATAACC GCGGCTGGGGCCTGTGGCTTATTGAAATCAGTGGAACATGGAAGGAGGGTTCATGATGTGGCAAGGAAATTCCGATTGGAGTCTGACATTTTGGTTAGCA ATTCGCTCCTGAAAATGCAAATTGATTGTCAAAGGATGGAAGATGCAAGGGGTTTTTTTAATCAGATGACAACCAAAGATGTTATATCATGGACGGAAAT CATATGTGGGTATGTGAAGAAGGGGGAATTTAACGAGGCCCTGAAACTGTTTCGGAAGATGAATATGGATGGAATAAAACCGGACTCACTTTCGGTTTCT AGTGTTCTTCCAGCTTGTGCAAGAACAGTAGCTCATAAGAACGGGAAAGAGATTCACGGATACTCACTTAGAAATGGAATGGACAACAATCTTATAGTTC AAAATGCTACCACGGACATGTATGCCAAATCAGGACTTGTTGATTATGCTTTAAAAGTTTTTGAAAGAATGAAGAAGAGAGATGTTATTTCATGGACTGT GATGATATTAGGCTTTAGCTTACATGGAAAAGGTGAGCTTGGAGTAGAATTGTTCTGCAGGATGGAGAAGGACCAGAGAGTAGAGGCTGATCAATTCACG TATGCAGCTGTTCTACACTGTTGCACTGCAGCCTGCATGGTTGAGGAAGGAAAGTTTTACTTCAATTGTATCAAGGAGCCTAACATCACACACTATGCTT TAATGGTATCTCTTCTTGCTCGTGCTTGCCTTTTTGATGAGGCAAGAGCCTTTATGGAGGAGCATCACATTGAAAGGCATGCAGAGGTGCTGAGAGCGCT GCTAGATGGGTGCTGGATGCACCATAGACGAAATATAGGTAAGCAAGTCTTTGAGCAGCTTTGTGATTTGGAACCTCTTGATGCTGAAAACTACGTGTTA CTGTCCAACTGGTATTCAGATAATGGAAAATGGGATCTGGTTGATAAATTGAGAGAAACAATAATGAGCATGGGCTCGAAACCTAAGAAAGCTTATAGTT GGATAGAGTTCCAAAATAAAGTTCACGTGTTTGGAACTGGAGATATCTCCCACCCAAGATCAGAGAGAATATATACAGAGTTGCAATGCTTGATGAAAAA AGTGAATGCTGAAGCACAGAGGCCTGCTTCAGGTTTTAGCTTCCATGGCGGGGATGCAGAGAGGGAGTGCATTCAAATTGGGCACAGCGAAATGTTGGCA CTTTCTTTTGGGCTTATCTGTACACAGCCCGGGGCAACCATTCGCATCACCAAAAACCTCCGTATGTGTCGTGGATGCCATGATTCTACAAAGCTCGTTT CTAAGATAGTAGAGCGAGAAATCATAATAAAGGACCCAAATTGTTTCCATCATTTTAAGGATGGATTTTGTTCATGTAGAGATTTTTGGTGA
AA sequence Show only first row Show all	>Potri.003G160100.1 pacid=42785903 polypeptide=Potri.003G160100.1.p locus=Potri.003G160100 ID=Potri.003G160100.1.v4.1 annot-version=v4.1 MDVLSLTRMPSFLKPEIPNCTSQCKRSLGHSSHVRVSTRFHRQLALTHKVLDEIPLSDTFAWNNLIHTHLSNRDPGGALSIYHHMMMRGACPDRRTLPRV LTASRICGDLFLGKQLHGQAIKLGFFDEHYVITALIEIYGRLDGIEAGKWLFDKSPRRNSVAWTMILKLYLMENKPDLAINVFYQMVELNARIDSVVLIT AAGACGLLKSVEHGRRVHDVARKFRLESDILVSNSLLKMQIDCQRMEDARGFFNQMTTKDVISWTEIICGYVKKGEFNEALKLFRKMNMDGIKPDSLSVS SVLPACARTVAHKNGKEIHGYSLRNGMDNNLIVQNATTDMYAKSGLVDYALKVFERMKKRDVISWTVMILGFSLHGKGELGVELFCRMEKDQRVEADQFT YAAVLHCCTAACMVEEGKFYFNCIKEPNITHYALMVSLLARACLFDEARAFMEEHHIERHAEVLRALLDGCWMHHRRNIGKQVFEQLCDLEPLDAENYVL LSNWYSDNGKWDLVDKLRETIMSMGSKPKKAYSWIEFQNKVHVFGTGDISHPRSERIYTELQCLMKKVNAEAQRPASGFSFHGGDAERECIQIGHSEMLA LSFGLICTQPGATIRITKNLRMCRGCHDSTKLVSKIVEREIIIKDPNCFHHFKDGFCSCRDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.003G160100 [exp]	0	1
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.011G063400 [exp]	6.63	0.8858	Pt-CHLI.1
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G250900 [exp]	6.92	0.8765
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G243800 [exp]	8.83	0.8889
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	11.91	0.8389
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	12.48	0.8745
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Potri.002G219900 [exp]	13.92	0.8989
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.019G085200 [exp]	18.97	0.8759
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	20.66	0.8408
AT3G12930			Lojap-related protein (.1)		Potri.001G458600 [exp]	22.04	0.8839
AT3G51290			Protein of unknown function (D...		Potri.009G137500 [exp]	24.08	0.8617

Compare expression of checked genes

Potri.003G160100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.