Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16510 72 / 1e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 69 / 4e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G09070 65 / 2e-11 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT3G62780 46 / 2e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 46 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 45 / 4e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 44 / 0.0002 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15740 42 / 0.0006 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61190 40 / 0.0008 BAP1 BON association protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070400 [exp] 479 / 2e-170 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G107175 [exp] 124 / 1e-32 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 96 / 2e-22 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 69 / 4e-13 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G018600 [exp] 65 / 1e-11 AT1G09070 157 / 5e-46 soybean gene regulated by cold-2 (.1) Potri.014G078700 [exp] 58 / 9e-10 AT2G45760 116 / 1e-32 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.002G155300 [exp] 58 / 9e-10 AT2G45760 120 / 4e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.013G048400 [exp] 48 / 6e-06 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 45 / 5e-05 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006523 [exp] 82 / 1e-17 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10004500 [exp] 77 / 5e-16 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10029901 [exp] 75 / 4e-15 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10009818 [exp] 56 / 8e-09 AT2G45760 120 / 6e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040924 [exp] 53 / 5e-08 AT2G45760 119 / 3e-33 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10036571 [exp] 48 / 4e-06 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040923 [exp] 47 / 4e-06 AT2G45760 110 / 4e-30 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10003570 [exp] 45 / 5e-05 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 45 / 5e-05 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10024505 [exp] 43 / 0.0001 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.003G160400.1 pacid=42786897 polypeptide=Potri.003G160400.1.p locus=Potri.003G160400 ID=Potri.003G160400.1.v4.1 annot-version=v4.1 ATGAAAAGGCTTAACTGGTGTACCGCGGAGAAGAAAAGGCTAGCAATTGGCTCGAAAGCAGGGTTAGCAGCGCATCCCCACGATGGGGTTCACAAGAGCT CAATAAAGAAGAAAGCAGAACATACTATGGAGGGGATCTCTCTAGAATTGAAAGAAATTTCCTGCAGAGATCTCAAAACCTTCAATTTCTTCCAAAAGCT CTCAGTCTTTGTTGCCGTCTCCATTTTTATTGATGAGCCAAAGAAGAATGAACAACGGCGAAAAAAGACGGCAGTGGACTTTCTTTATGGTGTATTGAAG AGGAACGAGAAGCAACAACAACGTCTGAAGCGGCAAAAGACACCTCCGAATACTTTCAACGATGAAGAAAAGAAGAACGAACAGCAACAACTTCTGCAGC GGCAAAAGACACCAGTGGACAGAGAAGGAGGTAGCAACCCTAAATGGAACCATATGATGCAGTTTAATCTCAATACCACTTCGCTTCCTGATTACGGTGA TCATCTCTTTTTCAAATTTGAATTGCGCTGCAAAGGTTCCATCTTTGGTAACAAAACTATTGGGGAAGTTTGTGTTCCATTCAAGGATTTGAATGAGGAG TTCAACGGCAGTGTCAGGTTTGTGAGCTATCAGGTCCGAAATAGCGATGGGAGGCCTAATGGTGTCCTGAATTTTTCCTATGAGGTGAACGGGAAGGTCA AGAGGAATGAAGTTGATGGTGCAAGGGTTGATTTGCCTCCAGGAATTCGTTTCTCATCACCTAAAAAAGTCCATTATCCATCCTTGGAAGTCGATGTTAA GTCGAGGAAAGCATGCTTATATCCTTCCCTGGATGATATCAGCTTCAGCTCTCCTTCGCCAGGAACCGGGTTTCCTTCTACGGAGTTGTGTTATCCAGTA AAGGCATGTTATACTATGCCTCCGCCAGCCTTTCCTTTACAGCTTCCTGTGGGTCACAGAGTGTATCAGCTTCAATATCCATCACCATTGACACAGTCTC CAGGTTCATATTGCTACACAACAAAGACAACCGAGCATGGTTGCGGTCTTCGTGGGCATACTGGAGGTTGGGCAATTAGGGATGTTAATGTATAG
AA sequence Show only first row Show all	>Potri.003G160400.1 pacid=42786897 polypeptide=Potri.003G160400.1.p locus=Potri.003G160400 ID=Potri.003G160400.1.v4.1 annot-version=v4.1 MKRLNWCTAEKKRLAIGSKAGLAAHPHDGVHKSSIKKKAEHTMEGISLELKEISCRDLKTFNFFQKLSVFVAVSIFIDEPKKNEQRRKKTAVDFLYGVLK RNEKQQQRLKRQKTPPNTFNDEEKKNEQQQLLQRQKTPVDREGGSNPKWNHMMQFNLNTTSLPDYGDHLFFKFELRCKGSIFGNKTIGEVCVPFKDLNEE FNGSVRFVSYQVRNSDGRPNGVLNFSYEVNGKVKRNEVDGARVDLPPGIRFSSPKKVHYPSLEVDVKSRKACLYPSLDDISFSSPSPGTGFPSTELCYPV KACYTMPPPAFPLQLPVGHRVYQLQYPSPLTQSPGSYCYTTKTTEHGCGLRGHTGGWAIRDVNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16510			Calcium-dependent lipid-bindin...		Potri.003G160400 [exp]	0	1
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.005G026700 [exp]	1.00	0.9129
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G033300 [exp]	2.00	0.9087
AT3G56880			VQ motif-containing protein (....		Potri.006G032300 [exp]	3.00	0.9033
AT3G56880			VQ motif-containing protein (....		Potri.016G029600 [exp]	4.89	0.8783
AT5G25240			unknown protein		Potri.006G190100 [exp]	5.74	0.8287
AT1G32928			unknown protein		Potri.001G450000 [exp]	7.74	0.8845
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079800 [exp]	8.24	0.9024	ERF6
AT1G32928			unknown protein		Potri.001G449900 [exp]	8.48	0.8721
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Potri.001G316300 [exp]	8.48	0.8767
					Potri.018G072101 [exp]	11.83	0.8762

Compare expression of checked genes

Potri.003G160400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.