Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HYD1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20050 267 / 2e-91 HYD1 HYDRA1, C-8,7 sterol isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070301 [exp] 160 / 4e-51 AT1G20050 115 / 1e-33 HYDRA1, C-8,7 sterol isomerase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032965 [exp] 334 / 2e-117 AT1G20050 261 / 5e-89 HYDRA1, C-8,7 sterol isomerase (.1) Lus10015386 [exp] 332 / 9e-117 AT1G20050 261 / 1e-88 HYDRA1, C-8,7 sterol isomerase (.1) Lus10027993 [exp] 331 / 2e-116 AT1G20050 266 / 1e-90 HYDRA1, C-8,7 sterol isomerase (.1) Lus10008164 [exp] 194 / 1e-63 AT1G20050 164 / 4e-52 HYDRA1, C-8,7 sterol isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05241 [poplar] [flax] EBP EXPERA (EXPanded EBP superfamily)
Representative CDS sequence Show only first row Show all	>Potri.003G160500.1 pacid=42785242 polypeptide=Potri.003G160500.1.p locus=Potri.003G160500 ID=Potri.003G160500.1.v4.1 annot-version=v4.1 ATGGAGGGGCAGCCGCATCCATACGCACCAAGAGATCTGAAACTGCCTGGCTATGTACCTAATTTCCTCACTCAATCCACCATTGTCGGCGTCTATTTAC TCACCTCCCTTCTTGTCGTCTCTCTCATCTGGATCCTCTCTGGAAGGTCTCGTAAGATAACAAAAATGAATAGGTTGCTCATGTGCTGGTGGGCTTTCAC TGGTCTCACACACTTGATTCTCGAGGGTTATTTTGCTTTCTCTCCAGAATTTTACAAGGACAAGACTGCTCATTATCTGGCTGAAGTTTGGAAAGAATAT AGCAAAGGTGATTCAAGATATGCAGCAAGGGATGCTGCAACAGTTACTGTTGAAGGATTGACTGCTGTTCTCGAGGGACCAGCTAGCCTCCTGGCAGTGT ATGCTATTGCTTCAGGAAAATCGTACAGCTACATACTTCAGTTTGCTGTTTGTTTGGGACAGCTCTATGGAACAGCTGTGTATTTCTTAACTGCCTACTT GGAAGGTGATCATTTTGCTACCAGTCCGTACCACTATTACGTATACTATATTGGTGCAAATGCCTCCTGGGTTGTAATTCCCTCGCTCATCGCTATGCGT TGTTGGAAAAAGATTTGCTCAGCAGTCCAAGTTCATGGCCAGAAAAGGACCAAAACTCGTTGA
AA sequence Show only first row Show all	>Potri.003G160500.1 pacid=42785242 polypeptide=Potri.003G160500.1.p locus=Potri.003G160500 ID=Potri.003G160500.1.v4.1 annot-version=v4.1 MEGQPHPYAPRDLKLPGYVPNFLTQSTIVGVYLLTSLLVVSLIWILSGRSRKITKMNRLLMCWWAFTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEY SKGDSRYAARDAATVTVEGLTAVLEGPASLLAVYAIASGKSYSYILQFAVCLGQLYGTAVYFLTAYLEGDHFATSPYHYYVYYIGANASWVVIPSLIAMR CWKKICSAVQVHGQKRTKTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Potri.003G160500 [exp]	0	1	HYD1.2
AT1G45000			AAA-type ATPase family protein...		Potri.002G031400 [exp]	4.58	0.7998	RPT4.2
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.002G127900 [exp]	11.40	0.8059
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.005G091400 [exp]	12.72	0.8213
AT5G57490		VDAC4, ATVDAC4	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.006G169400 [exp]	21.74	0.7549
AT1G26740			Ribosomal L32p protein family ...		Potri.010G165100 [exp]	23.15	0.7009
AT1G79010			Alpha-helical ferredoxin (.1)		Potri.009G116000 [exp]	23.36	0.7481
AT5G10160			Thioesterase superfamily prote...		Potri.003G020300 [exp]	23.87	0.7581
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G035600 [exp]	26.22	0.7998
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	26.85	0.7733	PBE1.1
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Potri.005G100500 [exp]	30.46	0.7289

Compare expression of checked genes

Potri.003G160500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.