Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26935 434 / 2e-150 DHHC-type zinc finger family protein (.1) AT5G41060 402 / 5e-138 DHHC-type zinc finger family protein (.1.2) AT3G48760 388 / 8e-132 DHHC-type zinc finger family protein (.1) AT4G24630 368 / 7e-125 DHHC-type zinc finger family protein (.1) AT5G50020 353 / 2e-118 DHHC-type zinc finger family protein (.1.2) AT3G56930 348 / 5e-116 DHHC-type zinc finger family protein (.1.2) AT5G05070 325 / 9e-108 DHHC-type zinc finger family protein (.1) AT2G40990 298 / 1e-97 DHHC-type zinc finger family protein (.1) AT3G56920 294 / 7e-97 DHHC-type zinc finger family protein (.1) AT3G51390 91 / 6e-20 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G070100 [exp] 795 / 0 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 438 / 6e-152 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 432 / 2e-149 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 410 / 9e-141 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 398 / 2e-136 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 396 / 3e-135 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 382 / 4e-130 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 359 / 6e-120 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.007G077000 [exp] 352 / 2e-119 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035177 [exp] 435 / 1e-150 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 429 / 4e-148 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 379 / 1e-128 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 377 / 3e-127 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 376 / 8e-127 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 373 / 2e-125 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 341 / 6e-115 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 340 / 4e-114 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 336 / 1e-111 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10035395 [exp] 324 / 4e-104 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.003G160600.1 pacid=42787086 polypeptide=Potri.003G160600.1.p locus=Potri.003G160600 ID=Potri.003G160600.1.v4.1 annot-version=v4.1 ATGGGGGGTGGTGAGAAAATGCGAGGAGGTGAAAAGATGTACAACACGTCAACTCCAATGCCTACGCACCAACTTTCCGATTCTAATCGCGGAATTATGG GTAACCATAACGATAATAATGCCCGTAACCTTCGAGTCTATCAAACCTGGAAAGGCAGCAATATATTCTGCTTTGGGGGTAGGCTTGTATTTGGTCCAGA TGTCAGGTCGCTGTTCCTTACAATCTTTCTAATCATGATTCCAGTAATCTTATTCTGTGCTTTTGTTTCTCAAAGGCTCATTAACGACTTCCAACACCAG CTAGGCTATTATGTTGTAGTTATATGTGTCATCCTGACAGCAAATGTTATTATTCTTCTCTTCCTTACTTCCGCAAGAGATCCAGGCATTATTCCTCGTA ATCTCCACCCTCCAGAAGATGAAGGCTCAAGCATATCTGTTGATTGGCCAGGAAGTCAGGTTGCTGGCCCAAGTTTACCTCCAACGAAAGATGTAATGGT GAATGGGATGGTAGTCAAGGTCAAATACTGCCAAACATGCTTGCTGTACCGACCACCACGATGCTCTCATTGCTCTATATGCAACAACTGCGTTGAGCGT TTTGATCATCATTGCCCGTGGGTGGGGCAATGTATTGGCAAGAGGAATTACAGATTCTTTTTCATGTTTGTGTCTTCCACAACGATGTTATGCCTCTATG TTCTTGCATTCTGCTGGGTCAACATCAGGAAGATAATGGATACATATCATTGCAATATGTGGACGGCCTTTCTGAAGTCTCCTGTTTCAGGAATCCTGAT ACTGTACACATTCATATGTGCTTGGTTTGTAGGCGGCCTCACTGCATTTCATCTGTACTTGATTTTCACCAATCAGACAACATATGAGAACTTCCGGTAT AGATATGATGGAAAGATGAATCCTTACAACCTTGGTTGCATTCGTAATGTTCTGGAAGTTTTCTTCTCAAAAATCCCAAAATCAAAGAACAAATTCCGGG CAAAGGTCAGGGTCAATTCATCTTCTAGCTATGCCAGTTCAATGCCATTGGGCGATTCCTTGAGCCCAGAGGTGCCCAAAAGGAGCTTTAATATAGAAGT GGGAAAACGACAAGCTGTTGCTGATGAGGATTTTGAAGATATACAAAGTCAGATTGACAGTGTTGGTGGATTGGAGAGGTGTGGAACCCAGCCAAGACAC ACAAATTGGGATCATAAAGCCAACTGGGAGATAACACCAGATATACATGTGTTAGCTGCTGAGTTTGGAATGGAATCTGGTTTAGCAAACAGGCAGAAAA TTTCTAGAGATCATTGA
AA sequence Show only first row Show all	>Potri.003G160600.1 pacid=42787086 polypeptide=Potri.003G160600.1.p locus=Potri.003G160600 ID=Potri.003G160600.1.v4.1 annot-version=v4.1 MGGGEKMRGGEKMYNTSTPMPTHQLSDSNRGIMGNHNDNNARNLRVYQTWKGSNIFCFGGRLVFGPDVRSLFLTIFLIMIPVILFCAFVSQRLINDFQHQ LGYYVVVICVILTANVIILLFLTSARDPGIIPRNLHPPEDEGSSISVDWPGSQVAGPSLPPTKDVMVNGMVVKVKYCQTCLLYRPPRCSHCSICNNCVER FDHHCPWVGQCIGKRNYRFFFMFVSSTTMLCLYVLAFCWVNIRKIMDTYHCNMWTAFLKSPVSGILILYTFICAWFVGGLTAFHLYLIFTNQTTYENFRY RYDGKMNPYNLGCIRNVLEVFFSKIPKSKNKFRAKVRVNSSSSYASSMPLGDSLSPEVPKRSFNIEVGKRQAVADEDFEDIQSQIDSVGGLERCGTQPRH TNWDHKANWEITPDIHVLAAEFGMESGLANRQKISRDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26935			DHHC-type zinc finger family p...		Potri.003G160600 [exp]	0	1
AT2G02170			Remorin family protein (.1.2)		Potri.010G098000 [exp]	4.58	0.8140
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	7.48	0.7516
AT1G51540			Galactose oxidase/kelch repeat...		Potri.010G252100 [exp]	8.94	0.7152
AT5G17600			RING/U-box superfamily protein...		Potri.003G093100 [exp]	13.26	0.7678
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	16.73	0.7478	Pt-NPGR2.1
AT5G59350			unknown protein		Potri.001G238300 [exp]	17.49	0.7217
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.011G045600 [exp]	17.94	0.7314
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.013G094400 [exp]	18.73	0.7152
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.001G116500 [exp]	19.28	0.7241	SMO1.2
AT3G11760			unknown protein		Potri.016G067600 [exp]	21.84	0.7013

Compare expression of checked genes

Potri.003G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.