Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	8
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28130 910 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT4G27260 705 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT5G54510 702 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT5G13370 690 / 0 Auxin-responsive GH3 family protein (.1) AT5G13360 685 / 0 Auxin-responsive GH3 family protein (.1.2.3) AT4G37390 665 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT5G13350 663 / 0 Auxin-responsive GH3 family protein (.1) AT5G13380 661 / 0 Auxin-responsive GH3 family protein (.1) AT5G13320 660 / 0 WIN3, GDG1, PBS3, GH3.12 HOPW1-1-INTERACTING 3, AVRPPHB SUSCEPTIBLE 3, GRETCHEN HAGEN 3.12, GH3-LIKE DEFENSE GENE 1, Auxin-responsive GH3 family protein (.1) AT2G23170 654 / 0 GH3.3 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G069000 [exp] 1140 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.011G129700 [exp] 703 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 701 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 698 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 697 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.001G298300 [exp] 662 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 661 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 661 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.014G095500 [exp] 381 / 4e-125 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014804 [exp] 676 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 667 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 629 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 628 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 622 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 615 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 613 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 576 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 379 / 2e-124 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 377 / 9e-124 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.003G161300.1 pacid=42786702 polypeptide=Potri.003G161300.1.p locus=Potri.003G161300 ID=Potri.003G161300.1.v4.1 annot-version=v4.1 ATGTTGCCAATCTTTGATCCAAATGATAATGAAGCTGGCTTGAAGCTTTTGGAGGACCTAACCAACAATGCATGTCAAATACAGCGACAGGTATTGGAGT ATATACTGACCACAAATTTGCATACAGGGTATCTTAAAAGCTTTCTCAACGGCGATTCTAGTAAGGAAAACTTCAAGAATAAAGTTCCCATCGTGAATTA TGAGGATATCAAGCCTTGTATCGAGCGAATTGCCAATGGAGAGCCTTCATCCATCATTTCAGCTCAACCAATAACTGAGCTCCTCACAAGCTCGGGTACT TCTGGAGGACAGCCAAAAATGATGCCTTCGACTGCTGAAGAATTGGAAAGAAAGACATTCTTTTATAACCTCCTTATGCCTATAATGAACAAGTATGTTG ATGGCTTGGACCAGGGAAAAGGAATGTATCTTTTGTTTACCAAACCCGAAATTAGCACCCCTTCGGGCTTGATGGCAAGACCTGTTCTAACAAGCTACTA CAAGAGCAGCAACTTCAGAAACCGTGCTTTCAATCGATATAACGTTTATACAAGCCCTGATGAGACCATCTTGTGTCCTGATAGCAAGCAGAGCATGTAC TGCCAATTGCTATGTGGCTTAGTACAACGCGAAGAGGTTCTAAGAGTTGGTGCAGTTTTTGCATCAGCTTTCCTGCGCGCTATCAAATTTTTGGAGGAAT ATCAGAAAGAATTATGCTCCAATATAAGAACAGGTCGTCTCAGTGATTGGATCACTGACCCCAATTGCAGAAATGCCGTCTCGTCATTTCTGAGCAAACC CAATTCAGAATTGGCTGATTTAATCGAGGTTGAATGTAGCGGCAAATCTTGCGAAGGGATAATTAAGAAGCTTTGGCCGAGAACAAAGTACATTGAAGTT ATTGTTACAGGTTCTATGGCACAATACATTCCAACCCTTGAATTCTATAGCGGTGGGCTCCCATTAGTTTCAACAATGTATGGCTCTTCTGAATGTTACT TGGGAATCAACTTCAAACCACTAAGCAACCCTTCTGATGTCTCTTACACACTCATTCCAAATATGGCTTACTTTGAATTCTTGCCCGTTGATAAAGACAA CAAAAAAGTGATACAGGCTGTCCAGTGCAATGGTGCTACCGATCATAATGGCAAACAAGAGGAGGATGGCAAGGAAAAGGACGTTGAAGCTGTTGATCTT GAGGACGTCAAGCTTGGTCACTACTATGAACTAGTTGTCACCACTTTTACAGGATTATATAGGTATAGAGTTGGAGACATTCTTATGGTAACTGGCTTCT ACAATAATGCTCCTCAATTTCGTTTTGTGCACCGGCGAAATGTGGTTTTAAGTATCGATACTGACAAGACCAATGAAGAAGACCTCTTAAAGGCGGTGAC ACAAGCTAAAGTCCTCCTTGAGCCACTCGGTTTCCTTCTAACGGAGTACACGAGCTTCGCTGACACTTCCTCAATCCCAGGTCATTATGTGCTATTTTGG GAACTTAAGACGCAAGGAACTAATGATCTGCCGGAGCTTGATCCAATTACAATGGAAAAGTGCTGTTCCACTGTTGAAGAATCGCTCGATTCTATTTATA GAAGGTGTAGGAAGAAAGACAAATCAATTGGACCACTGGAAATAAGAGTGGTGACACATGGAACTTTCGATGCACTCATGGATTTTTGTGTATCTCAAGG GTCATCAGTTAACCAGTACAAGACTACAAGATGCATTAAATCCGAGGAGGCCTTCAAGATTTTGCATTCCAGGGTGGTGGGAAGATTTTTCAGCAAGAAA ACTCCTTTCTGGGAGCCGTTCAGAATTGAAACTAATTAG
AA sequence Show only first row Show all	>Potri.003G161300.1 pacid=42786702 polypeptide=Potri.003G161300.1.p locus=Potri.003G161300 ID=Potri.003G161300.1.v4.1 annot-version=v4.1 MLPIFDPNDNEAGLKLLEDLTNNACQIQRQVLEYILTTNLHTGYLKSFLNGDSSKENFKNKVPIVNYEDIKPCIERIANGEPSSIISAQPITELLTSSGT SGGQPKMMPSTAEELERKTFFYNLLMPIMNKYVDGLDQGKGMYLLFTKPEISTPSGLMARPVLTSYYKSSNFRNRAFNRYNVYTSPDETILCPDSKQSMY CQLLCGLVQREEVLRVGAVFASAFLRAIKFLEEYQKELCSNIRTGRLSDWITDPNCRNAVSSFLSKPNSELADLIEVECSGKSCEGIIKKLWPRTKYIEV IVTGSMAQYIPTLEFYSGGLPLVSTMYGSSECYLGINFKPLSNPSDVSYTLIPNMAYFEFLPVDKDNKKVIQAVQCNGATDHNGKQEEDGKEKDVEAVDL EDVKLGHYYELVVTTFTGLYRYRVGDILMVTGFYNNAPQFRFVHRRNVVLSIDTDKTNEEDLLKAVTQAKVLLEPLGFLLTEYTSFADTSSIPGHYVLFW ELKTQGTNDLPELDPITMEKCCSTVEESLDSIYRRCRKKDKSIGPLEIRVVTHGTFDALMDFCVSQGSSVNQYKTTRCIKSEEAFKILHSRVVGRFFSKK TPFWEPFRIETN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.003G161300 [exp]	0	1	8
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	1.73	0.9376
AT5G04980			DNAse I-like superfamily prote...		Potri.010G247800 [exp]	3.00	0.9294
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.006G166900 [exp]	5.09	0.8979
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Potri.002G254200 [exp]	5.65	0.8950
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Potri.011G129700 [exp]	6.00	0.8947	GH3-5,DFL1.2
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	6.00	0.9297
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.003G147400 [exp]	6.32	0.9174
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	8.48	0.9109
AT1G34110			Leucine-rich receptor-like pro...		Potri.002G063300 [exp]	9.48	0.9099
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013100 [exp]	11.83	0.8843

Compare expression of checked genes

Potri.003G161300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.