Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-NEF1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13390 1340 / 0 NEF1 no exine formation 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068900 [exp] 1624 / 0 AT5G13390 1331 / 0.0 no exine formation 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001797 [exp] 1424 / 0 AT5G13390 1545 / 0.0 no exine formation 1 (.1) Lus10002569 [exp] 1025 / 0 AT5G13390 1051 / 0.0 no exine formation 1 (.1) Lus10002568 [exp] 523 / 5e-175 AT5G13390 647 / 0.0 no exine formation 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G161400.2 pacid=42787003 polypeptide=Potri.003G161400.2.p locus=Potri.003G161400 ID=Potri.003G161400.2.v4.1 annot-version=v4.1 ATGTTGCCGCCGGAGATCCAATCGCGGTCATTCCGCCCTTATATCGCTGCCTCCATCTCCTCCCCTTCCTTTGCCTCCTCCTCATTCCCCTCTGCTTCTC CTTACTCCCCTAACCAAAACCCTAATCGTAACTCTCACTTCCCTTCCCCCTCTACCTCCTCTTCTAGATCTCGTTTCTCTGCTTCTTCTTTCGCTCACAA TTCTCGCATTGCCCTCGCTCTCGTTCCTTGCGCCGCTTTCCTCCTTGACCTCGGTGGCGCTCCCGTCGTCGCAACCCTAACCCTAGGGCTAATGATCGCG TACATCCTCGACTCACTCAATTTCAAATCCGGTGCGTTCTTCGGTGTTTGGGCTTCTCTAATTGCAGCTCAGGTCGCCTTCTTTTTTAGCTCCTCATCGA TCTTCACTTTCAATTCGATTCCTCTTGGTTTGCTCGCCGCTCTCCTCTGTGCACAAACGAATTTCTTAATTGGCGCCTGGGCTTCGCTTCAGTTCAAATG GATCCAATTAGAAAACCCTAGTATCGTGATCGCGCTTGAACGTTTGTTATTCGCTTGCGTTCCTTTTGCTGCTTCTTCGATTTTCACTTGGGCTGCAACC GCTGCTGTCGGTATGCAACATGCTGCGTATTATCTGATGATTTTAAATTGTGTTTTCTATTGGATGTTTGCAATTCCTCGTACTTCTTCATTTAAAGCGA AGCAAGAAGTGAAATATCATGGTGGAGAGGTTCCCGATGATAATTTTATACTCAGTCCACTAGAGGGTTGTTTTCATACATTAAATTTGCTCTTCTTTCC GTTGGTATTTCATGTTGCGTCGCATTACTCAGTGATTTTCTCATCTGCTGCGTCAGTATGCGATTTGTTGCTGTTGTTTTTTATTCCCTTTCTGTTTCAA CTGTACGCATCTACTAGGGGTGCACTTTGGTGGGTGACCAAGAATGCGAATCAGTTGCATAGTATTCGTGTAGTGAATGGAGCTGTTGCACTGATTGTTG TTGTGATTTGTTTGGAGTTTAGAGTTGTTTTCCATTCGTTTGGAAGGTATATTCAGGTTCCTTCGCCATTGAATTATCTGCTTGTGACTGTGACAATGCT TGGAGGGGCAGCTGGTGCTGGTGCTTCAGCCCTTGGAATGATTTCTGATGCTTTTAGTTCAGCGGCTTTCACTGCTTTGGCTGTAATCGTCAGTTCTGCT GGAGCACTTGTTGTGGGTTTTCCTGTGCTGTTTCTTCCCCTGCCTGCGGTTGCCGGATTTTATTTTGCTTGTTTTGTCACAAAGAAAAGTCTGCCATCAT ATTTTGCCTTTTTTGTGCTCGGGAGCCTGATGGTTACATGGTTTGTGCTGCACAATTTCTGGGATCTAAATATTTGGTTGTCTGGCATGCCCCTGAGGTC GTTTTGCAAACTTATAGTCGCAAATGTTATTCTTGCAATGGCTGTTCCAGGTTTAGCTCTGCTACCACTGAAACTTCATTTTTTAGCCGAGATTGGTTTG ATCAGCCATGCATTGCTGTTGTGCCATATTGAGAATCGTTTTTTCAATTACCCGGGTCTTTATTTCTATGGAATGGAGGAGGATGTGATGTATCCAAGCT ATATGGTTATTCTGACAACCTTTGTGGGTTTGGCTCTTGTAAGAAGACTATCTGCGGATCATCGGATTGGACCGAAGGCAGTTTGGATATTGACTTGCTT GTATTCTTCAAAGTTATCCATGCTGTTTATTTCATCAAAGCCTGTTGTATGGGTTTCAGCTGTACTTTTACTTGCTGTTACTCCCCCGTTGCTTCTTTAC AAGGAGAAATCACAAACAGGCTCAAAGATGAAACCATGGCAAGGTTATGTACATGCTGGTGTGGTAGCTCTTTCAGTCTGGTTCTTCCGTGAAGCAATTT TTGAAGCCCTTCAGTGGTGGAATGGGAGGGCTCCATCTGATGGTTTGCTTTTGGGTTTCTGCATTGCCTTGACTGGATTGGCTTGTGTACCCATTGTTGC CTTGCACTTCTCTCATGTCCTGTCTGCTAAGAGATGCCTAGTACTGGTGGTGGCAACAGGTTTACTGTTTATCCTGATGCAGCCACCAATCTCAATAGCA TGGACTTATCGATCTGACATAATCAGAGCAGCTCGTCAGTCTTCTGATGACATTTCCATCTATGGCTTCATGGCATCAAAACCGACCTGGCCATCATGGT TGCTTATTGTGGCGATTCTGCTCACTTTAGCAGCAGTGACATCCATCATACCCATTAAGTATGTGGTAGAGCTAAGAACTTTTTACTCTATTGCAATAGG GTTTGCTCTTGGAGTATACATATCTGCTGAGTATTTTCTTCAAGCTGCTGTTCTGCATGCCCTCATTGTTGTAACCATGGTCTGCACCTCTGTGTTTGTG GTCTTCACTCATTTTCCATCCGCTTCAAGCACAAAGCTGCTACCATGGTTTTTTGCTTTGCTGGTAGCCCTCTTTCCTGTGACATATCTGTTGGAGGGTC AGGTGAGAATCAAAAGCATCCTTGGAGATGAAGTTGGAGATCTGGCAGAGGAAGACAGGAAGCTCACTACTCTATTGGCTGTTGAGGGGGCAAGGACATC TCTTCTTGGTTTATATGCAGCAATCTTCATGCTCATAGCTCTGGAGGTTAAGTTTGAGGTTGCCTCACTTACCCGGGAAAAGGCTCTTGAAAGGGGTGGA ATTAGACATAGTCAAGCTAGTCAAAGTAGTTCTTCAAATTTTGCTCCACGAATGAGGTTCATGCAGCAAAGGCGTGCCTCTACTGTGCCAACCTTTACAA TTAAGAGAATGGCTGCCGAGGGAGCTTGGATGCCTGCAGTTGGTAATGTCGCCACTATAATGTGCTTCGCCATTTGCCTGATATTGAACATCAATCTGAC CGGGGGATCAAACCAAGCTATCTTCTTCCTGGCTCCTATCCTACTGCTTCTCAACCAGGACTCAGATTTTGTCGCTGGTTTTGGGGACAAACAAAGATAT TTCCCTGTTACAGTGGCTATATCGGCCTACTTGGTCTTGACATCCCTTTACAGCATATGGGAAGATACATGGCATGGTAATACTGGTTGGGGCATTGAAA TTGGGGGTCCTGATTGGTTCTTTGCAGTCAAGAATTTAGCCATCCTCATTCTTACGTTCCCCAGTCATATACTCTTCAACCGGTTTGTTTGGAGTTACAC AAAGCAGACGAACTCGTCACCACTGATCACGCTTCCCCTTAACCTGCCATCCATTATAATATCAGATATTATGAAGATCAGGATATTGGGATGCTTAGGA ATTGTTTATACCATAGCCCAGACCCTTGTTTCTAGACAGCAATATATCTCAGGAATGAAGTATATTTAG
AA sequence Show only first row Show all	>Potri.003G161400.2 pacid=42787003 polypeptide=Potri.003G161400.2.p locus=Potri.003G161400 ID=Potri.003G161400.2.v4.1 annot-version=v4.1 MLPPEIQSRSFRPYIAASISSPSFASSSFPSASPYSPNQNPNRNSHFPSPSTSSSRSRFSASSFAHNSRIALALVPCAAFLLDLGGAPVVATLTLGLMIA YILDSLNFKSGAFFGVWASLIAAQVAFFFSSSSIFTFNSIPLGLLAALLCAQTNFLIGAWASLQFKWIQLENPSIVIALERLLFACVPFAASSIFTWAAT AAVGMQHAAYYLMILNCVFYWMFAIPRTSSFKAKQEVKYHGGEVPDDNFILSPLEGCFHTLNLLFFPLVFHVASHYSVIFSSAASVCDLLLLFFIPFLFQ LYASTRGALWWVTKNANQLHSIRVVNGAVALIVVVICLEFRVVFHSFGRYIQVPSPLNYLLVTVTMLGGAAGAGASALGMISDAFSSAAFTALAVIVSSA GALVVGFPVLFLPLPAVAGFYFACFVTKKSLPSYFAFFVLGSLMVTWFVLHNFWDLNIWLSGMPLRSFCKLIVANVILAMAVPGLALLPLKLHFLAEIGL ISHALLLCHIENRFFNYPGLYFYGMEEDVMYPSYMVILTTFVGLALVRRLSADHRIGPKAVWILTCLYSSKLSMLFISSKPVVWVSAVLLLAVTPPLLLY KEKSQTGSKMKPWQGYVHAGVVALSVWFFREAIFEALQWWNGRAPSDGLLLGFCIALTGLACVPIVALHFSHVLSAKRCLVLVVATGLLFILMQPPISIA WTYRSDIIRAARQSSDDISIYGFMASKPTWPSWLLIVAILLTLAAVTSIIPIKYVVELRTFYSIAIGFALGVYISAEYFLQAAVLHALIVVTMVCTSVFV VFTHFPSASSTKLLPWFFALLVALFPVTYLLEGQVRIKSILGDEVGDLAEEDRKLTTLLAVEGARTSLLGLYAAIFMLIALEVKFEVASLTREKALERGG IRHSQASQSSSSNFAPRMRFMQQRRASTVPTFTIKRMAAEGAWMPAVGNVATIMCFAICLILNINLTGGSNQAIFFLAPILLLLNQDSDFVAGFGDKQRY FPVTVAISAYLVLTSLYSIWEDTWHGNTGWGIEIGGPDWFFAVKNLAILILTFPSHILFNRFVWSYTKQTNSSPLITLPLNLPSIIISDIMKIRILGCLG IVYTIAQTLVSRQQYISGMKYI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13390		NEF1	no exine formation 1 (.1)		Potri.003G161400 [exp]	0	1	Pt-NEF1.1
AT3G28720			unknown protein		Potri.004G123900 [exp]	5.00	0.6734
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	14.69	0.6316
AT5G06750			Protein phosphatase 2C family ...		Potri.016G045600 [exp]	16.97	0.6189
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	19.84	0.6700	Pt-ATRLI1.1
AT5G66960			Prolyl oligopeptidase family p...		Potri.007G035900 [exp]	28.93	0.6674
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.014G193400 [exp]	31.49	0.6469	Pt-MRP5.2
AT3G62900			CW-type Zinc Finger (.1)		Potri.013G020200 [exp]	41.15	0.6144
AT1G55750			BSD domain (BTF2-like transcri...		Potri.007G107400 [exp]	47.33	0.6177
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	48.06	0.5930	CEF.1
AT2G26310			Chalcone-flavanone isomerase f...		Potri.018G048500 [exp]	48.92	0.5944

Compare expression of checked genes

Potri.003G161400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.