Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13420 528 / 0 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068200 [exp] 599 / 0 AT5G13420 668 / 0.0 Aldolase-type TIM barrel family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032613 [exp] 549 / 0 AT5G13420 675 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10043136 [exp] 547 / 0 AT5G13420 671 / 0.0 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00923 [poplar] [flax] TAL_FSA Transaldolase/Fructose-6-phosphate aldolase
Representative CDS sequence Show only first row Show all	>Potri.003G161900.3 pacid=42787406 polypeptide=Potri.003G161900.3.p locus=Potri.003G161900 ID=Potri.003G161900.3.v4.1 annot-version=v4.1 ATGGCTACCATTTCAAAGCTCTCAAATCCAAGCCCCGCAGCCTCCCTCTCAGCTCCTTCTAGATCTTCTTCCTTGCCTAAAGTCTTCCTCGGTTTCAGTA CCAAAACTTCTCTCTCCAAAGTTAGGCTGTCCTTGAAGAACACCCAACCGTCCCCCAGGACCTCCTTGGTTGTCAGGTGTTCTCAATCCAGTGGAAATGG TAGCCCAATAAAGAGAACCACTCTTCATGATCTTTATGAACGGGAGGGGCAGAGTCCATGGTATGACAACCTCTGCAGGCCTGTGACGGACCTGATTCCT CTGATCGAGAGTGGAGTTAGAGGCGTAACAAGCAACCCAGCGATTTTCCAGAAGGCAATATCATCTTCAAATGCTTACAATGACCAATTCAGGGAACTTG TGCAATCAGGAAAAGACATTGAAACTGCTTACTGGGAACTTGTGGTGAAGGACATACAAGATGCATGCAAACTTTTTGAGTCAATTTATGATCAAACAGA TGGTGGTGATGGCTATGTTTCTGTTGAAGTGTCTCCCAGATTAGCTGATGACACTCAAGGGACTGTTGAGGCTGCCAAGTGGCTTCATAAAGTGGTTGAT CGCCCCAATGTGTACATTAAAATCCCTGCTACTGCTCCTTGCATCCCCTCAATCAAGGAAGTTATTTCGCTTGGCATCAGTGTCAATGTGACTCTGATAT TCTCTCTCACAAGATACGAAGCAGTCATTGATGCCTACTTGGATGGCCTTGAGGCATCTGGACTAAGTGATCTCTCCAGAGTTACAAGTGTTGCTTCCTT CTTTGTCAGCAGGGTGGACACTCTCATTGACAAAATGCTGGAAAAGATCGGAACCCCTGAAGCCCTTGATCTACGAGGAAAGGCTGCGGTGGCTCAAGCA GCCCTAGCATACAAGCTCTACCAAAAGAAATTCTCTGGTCCAAGATGGGAGGCTTTGGTGAAAAAAGGTGCTAAGAAGCAGAGGTTGCTGTGGGCATCAA CCAGTGTCAAGAACCCTGCCTACCCAGACACTTTATACGTTGCTCCCCTCATTGGACCTGACACTGTAAGCCATCTTGTATCTCAGAAGCCTGTCTGTTG GATTTATGTGGATGCTCTTTCATGA
AA sequence Show only first row Show all	>Potri.003G161900.3 pacid=42787406 polypeptide=Potri.003G161900.3.p locus=Potri.003G161900 ID=Potri.003G161900.3.v4.1 annot-version=v4.1 MATISKLSNPSPAASLSAPSRSSSLPKVFLGFSTKTSLSKVRLSLKNTQPSPRTSLVVRCSQSSGNGSPIKRTTLHDLYEREGQSPWYDNLCRPVTDLIP LIESGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIETAYWELVVKDIQDACKLFESIYDQTDGGDGYVSVEVSPRLADDTQGTVEAAKWLHKVVD RPNVYIKIPATAPCIPSIKEVISLGISVNVTLIFSLTRYEAVIDAYLDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALDLRGKAAVAQA ALAYKLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVAPLIGPDTVSHLVSQKPVCWIYVDALS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	1.41	0.9331
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.001G320400 [exp]	2.00	0.9409
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Potri.016G111000 [exp]	2.44	0.9268
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	7.07	0.8954
AT3G07510			unknown protein		Potri.002G239500 [exp]	7.34	0.8895
AT5G15790			RING/U-box superfamily protein...		Potri.017G100100 [exp]	7.61	0.8776
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.019G038268 [exp]	7.74	0.9174
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017800 [exp]	7.87	0.8750
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.009G087100 [exp]	8.30	0.8456
AT1G67570			Protein of unknown function (D...		Potri.008G178100 [exp]	9.16	0.8845

Compare expression of checked genes

Potri.003G161900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.