Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27440 707 / 0 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G61840 677 / 0 GUT1, IRX10-L Exostosin family protein (.1) AT5G22940 295 / 1e-95 F8H FRA8 homolog (.1) AT2G28110 286 / 1e-92 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G03795 124 / 1e-30 Exostosin family protein (.1) AT4G38040 122 / 2e-30 Exostosin family protein (.1) AT4G16745 119 / 6e-29 Exostosin family protein (.1.2) AT5G11130 114 / 1e-27 Exostosin family protein (.1) AT5G37000 114 / 3e-27 Exostosin family protein (.1) AT4G32790 114 / 4e-27 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068100 [exp] 724 / 0 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.012G109200 [exp] 679 / 0 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 679 / 0 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 583 / 0 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.009G006500 [exp] 302 / 2e-98 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.015G107200 [exp] 286 / 8e-96 AT5G61840 327 / 3e-112 Exostosin family protein (.1) Potri.018G025200 [exp] 130 / 3e-33 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 125 / 2e-31 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.T124607 [exp] 124 / 3e-31 AT5G20260 545 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043326 [exp] 689 / 0 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 688 / 0 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10043209 [exp] 674 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10032530 [exp] 674 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 278 / 5e-89 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 231 / 3e-71 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10001917 [exp] 118 / 1e-28 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10001958 [exp] 113 / 3e-28 AT5G25310 372 / 1e-127 Exostosin family protein (.1) Lus10012723 [exp] 114 / 1e-27 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 114 / 2e-27 AT5G03795 603 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.003G162000.1 pacid=42784852 polypeptide=Potri.003G162000.1.p locus=Potri.003G162000 ID=Potri.003G162000.1.v4.1 annot-version=v4.1 ATGAGGGTGTGCTTGTGGTTTTTTGTTGTGGTTATTGTTTTCGGTTTTGGTGATGGAAAAAATGCTGATCAAAGGCTACGCACAGAGAGGATTTCAGGAA GTGCTGGGGATGTGTTGGAAGATAATCCAGTGGGAAGATTGAAAGTCTATGTTTATGAGCTTCCTAGTAAATACAACAAGAAATTACTGCAGAAGGACCC CAGATGTCTCACTCATATGTTTGCTGCTGAAATTTTCATGCATAGATTTCTCTTATCCAGCCCAGTCCGAACCCTTAATCCAGAAGAAGCAGATTGGTTT TATACCCCTATATACCCCACTTGTGACCTCACACCTACTGGCTTGCCGTTGCCCTTCAATTCTCCAAGGATGATGAGAAGTGCAATACAGCTTCTCTCCT CCAATTGGCCTTACTGGAATCGTACAGAAGGGGCTGATCACTTCTTTGTTGTGCCCCATGACTTTGGAGCCTGCTTCCACTATCAGGAAGAGAAAGCCAT TGAGCGGGGCATTCTTCCACTACTCCGGCGTGCTACTTTAGTTCAAACTTTTGGGCAGCGAAACCATGTGTGCTTGAATGAGGGGTCAATTACAATTCCT CCGTATGCTCCTCCTCAAAAGATGCAGGCCCACCAGATTCCCCTTGACACTCCGCGGTCAATTTTTGTTTACTTCCGCGGATTGTTTTATGATGTAAATA ATGATCCGGAAGGTGGTTATTATGCAAGAGGAGCAAGGGCTGCAGTTTGGGAGAATTTCAAAAACAATCCACTCTTTGACATCTCCACCGATCATCCAAC AACATATTATGAAGACATGCAACGAGCTATATTTTGCTTGTGCCCACTCGGTTGGGCCCCATGGAGTCCTAGACTGGTCGAAGCAGTGGTATTCGGATGC ATTCCTGTAATTATAGCAGATGATATTGTTTTACCATTTGCCGATGCTATCCCATGGGAGGAGATTGGAGTGTTTGTAGCAGAGGAAGATGTCCCTCACC TGGACACATTCCTGACATCTATACCACCAGAAGTGATTTTAAGGAAACAAAGGCTTCTTGCAAACCCTTCCATGAAACGTGCAATGTTATTCCCACAACC TGCACAACCTGGTGATGCTTTCCACCAAATACTGAATGGGTTGGCTCGTAAGTTGCCGCATGACAGGACTGTCTTACTTGAAACCTGGTCAGAAGGTTTT GAATTGGACAGCAGGACCAGCTGGGGACCTGAAACCTTGGTAAGAGAAGTGTCTTTTTCTCAAAAGAGATGGTTGTAG
AA sequence Show only first row Show all	>Potri.003G162000.1 pacid=42784852 polypeptide=Potri.003G162000.1.p locus=Potri.003G162000 ID=Potri.003G162000.1.v4.1 annot-version=v4.1 MRVCLWFFVVVIVFGFGDGKNADQRLRTERISGSAGDVLEDNPVGRLKVYVYELPSKYNKKLLQKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWF YTPIYPTCDLTPTGLPLPFNSPRMMRSAIQLLSSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLRRATLVQTFGQRNHVCLNEGSITIP PYAPPQKMQAHQIPLDTPRSIFVYFRGLFYDVNNDPEGGYYARGARAAVWENFKNNPLFDISTDHPTTYYEDMQRAIFCLCPLGWAPWSPRLVEAVVFGC IPVIIADDIVLPFADAIPWEEIGVFVAEEDVPHLDTFLTSIPPEVILRKQRLLANPSMKRAMLFPQPAQPGDAFHQILNGLARKLPHDRTVLLETWSEGF ELDSRTSWGPETLVREVSFSQKRWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.003G162000 [exp]	0	1
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.005G051600 [exp]	2.00	0.8614
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.013G086600 [exp]	3.87	0.8474
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G054600 [exp]	5.91	0.8709
AT1G76070			unknown protein		Potri.005G245600 [exp]	10.19	0.8425
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Potri.002G113800 [exp]	10.58	0.8280	RXW8.1
AT3G56640		SEC15A	exocyst complex component sec1...		Potri.016G032100 [exp]	11.61	0.8236
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	14.28	0.7917
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.014G146200 [exp]	15.65	0.7911
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	16.97	0.8405
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.010G031601 [exp]	17.49	0.8611

Compare expression of checked genes

Potri.003G162000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.