Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01630 356 / 3e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 152 / 5e-45 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 102 / 2e-25 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 101 / 4e-25 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75170 99 / 2e-24 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 93 / 3e-22 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G09160 89 / 5e-20 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT4G39180 87 / 2e-19 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 87 / 2e-19 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G34580 87 / 2e-19 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068000 [exp] 447 / 2e-161 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 332 / 1e-115 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.008G135600 [exp] 165 / 3e-50 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.015G023000 [exp] 164 / 4e-50 AT1G14820 276 / 5e-94 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 157 / 2e-47 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.004G138200 [exp] 96 / 2e-22 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.007G025800 [exp] 93 / 3e-22 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.013G068700 [exp] 93 / 9e-22 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 92 / 1e-21 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004684 [exp] 317 / 1e-109 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040252 [exp] 311 / 2e-107 AT1G01630 319 / 8e-111 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10022428 [exp] 308 / 1e-106 AT1G01630 323 / 1e-112 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10016733 [exp] 304 / 8e-105 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10003699 [exp] 172 / 6e-53 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10001584 [exp] 170 / 2e-52 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 157 / 2e-47 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 100 / 5e-25 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10010804 [exp] 100 / 6e-25 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 96 / 2e-23 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF13716 [poplar] [flax] CRAL_TRIO_2 Divergent CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.003G162100.1 pacid=42786594 polypeptide=Potri.003G162100.1.p locus=Potri.003G162100 ID=Potri.003G162100.1.v4.1 annot-version=v4.1 ATGGAATTCAGTAACATAGAGGAATCAAATGGGGTGATCACAGAAGAGAAAGAGAATGGAAATGAAATCAATGAGATTGAACAAAGCAAAGTGCGTCTCA TGAGAGCCTTTGTTGAAAGAGAAGATCCCTCTGTCAAGGAAGTGGATGATTTGATGATCCGGAGATTTCTGCGTGCTCGAGAACTAGACATTGAGAAGGC ATCGACCTTATTCCAAAAATACCTAAGCTGGAGGCGATCGTTTATCCCTAATGGCTTCATAGCTCCATCAGAGATTCCAAATGAACTTGCCCAAAACAAG TTTTTTATGCAGGGTGCTGATAAGCAGAACCGTCCCGTGGTGGTGGTTTTCGGCGCCAGACATAAGCCTTACAAAGGAAGTTTCGAGGAGTTCAAGCGTT TTGTTGTCTACACTCTCGAGAGAATATGTGCCATAATGCCAGCTGGAGAGGAAAAGTTTGTGTCCATTGCAGATCTTAAAGGGTGGGGATACTCCAATAG TGATATACGTGGGTATCTAGCAGCATTATCGATATTGCAGGATTGCTACCCAGAGAGGTTAGGCAAATTGTTCATAGTTCATGTGCCTTACATTTTTATG ACTGCATGGAAGGTTGTGTCCCCGTTTATTGACAGAAAAACCAAAAACAAGATAATCTTTGTTGAGAACAAAAAACTGAAATCCACTCTGCTTGAGGACA TTGATGAGAGCCAGCTCCCAGATGTTTACGGAGGCAAACTATCTTTAGTTCCTATCCAAGACGACTAA
AA sequence Show only first row Show all	>Potri.003G162100.1 pacid=42786594 polypeptide=Potri.003G162100.1.p locus=Potri.003G162100 ID=Potri.003G162100.1.v4.1 annot-version=v4.1 MEFSNIEESNGVITEEKENGNEINEIEQSKVRLMRAFVEREDPSVKEVDDLMIRRFLRARELDIEKASTLFQKYLSWRRSFIPNGFIAPSEIPNELAQNK FFMQGADKQNRPVVVVFGARHKPYKGSFEEFKRFVVYTLERICAIMPAGEEKFVSIADLKGWGYSNSDIRGYLAALSILQDCYPERLGKLFIVHVPYIFM TAWKVVSPFIDRKTKNKIIFVENKKLKSTLLEDIDESQLPDVYGGKLSLVPIQDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.003G162100 [exp]	0	1
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.014G092300 [exp]	1.00	0.9277
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.013G123800 [exp]	1.73	0.8896
AT5G24760			GroES-like zinc-binding dehydr...		Potri.004G067000 [exp]	4.00	0.8877
AT1G19130			unknown protein		Potri.006G140000 [exp]	6.24	0.8577
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	7.07	0.8936
AT2G47360			unknown protein		Potri.002G195400 [exp]	9.21	0.8549
AT1G04650			unknown protein		Potri.001G053000 [exp]	11.74	0.8337
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	15.96	0.8564
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	16.06	0.8776
AT1G58170			Disease resistance-responsive ...		Potri.001G009100 [exp]	17.14	0.8575

Compare expression of checked genes

Potri.003G162100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.