Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GLYRS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29880 1192 / 0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) AT1G29870 575 / 0 tRNA synthetase class II (G, H, P and S) family protein (.1) AT3G44740 246 / 2e-76 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G067800 [exp] 1358 / 0 AT1G29880 1203 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042096 [exp] 1228 / 0 AT1G29880 1174 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10029203 [exp] 1108 / 0 AT1G29880 1067 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10008792 [exp] 1096 / 0 AT1G29880 1057 / 0.0 glycyl-tRNA synthetase / glycine--tRNA ligase (.1) Lus10036929 [exp] 198 / 3e-54 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10036930 [exp] 92 / 3e-22 AT1G29880 92 / 4e-23 glycyl-tRNA synthetase / glycine--tRNA ligase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0600 [poplar] [flax] S15_NS1 PF00458 [poplar] [flax] WHEP-TRS WHEP-TRS domain CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0458 [poplar] [flax] IIaaRS-ABD PF03129 [poplar] [flax] HGTP_anticodon Anticodon binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G162300.1 pacid=42785974 polypeptide=Potri.003G162300.1.p locus=Potri.003G162300 ID=Potri.003G162300.1.v4.1 annot-version=v4.1 ATGCGCATTCTCATTTCTCTGGTTTCCTCGTCAACTCTAATCGATTTACTCTCTTTCTCTCGCCGCCTACACACCAAAATATCCCCTTTCTCAACCCTAA TCCACCACAAACCTTCACCAGCCATGGCCGCCTCCGAGGACTCGCTTCGACGCGCTCTCGCCGAGAAACAATCCTCGATCGAATCTCAAGGCAACACTGT CCGCGCACTCAAAGCCTCTAATGCTGAAAAGGCTACCGTCGACGAGGCAATTGAAAAATTGAACGCGTTGAAACTAGACAAGTCCGTGATGGAGAAACAA CTTCAAGCTGCCGTTAATGGTAACGGTCCTGATGGTTCTGTTAATAAGGAAGCATTCCGTCAAGCTGTGGTAAATACGCTTGAACGGAGGTTGTTTTATA TCCCTTCTTTTAAGATTTATCGTGGTGTCGCTGGGCTTTATGATTATGGGCCTCCTGGTTGCGCCGTCAAGTCTAATGTTCTTTCTTTTTGGCGCCAGCA TTTTGTTCTTGAGGAGAATATGTTGGAGGTTGATTGCCCATGTGTGACGCCTGAGGTTGTCCTTAAAGCATCTGGTCACGTGGATAAATTCACGGACCTT ATGGTTAAGGATGAAAAAACTGGGACTTGCTGTCGTGCGGATCACTTGCTTAAGGACTTTTGTAATGAGAAGATTCAGAAAGATCTTAGCATAAGTGCAG AGAAGGCTGCAGAACTGAAACATGTACTTGCTATCCTGGATGATCTCTCTGCTGAAGAGCTGGGGGCGAAGATCAAGGAGTATGGTATTACAGCACCAGA CACGAAGAATCCACTTTCCGATCCTTATCCATTCAACTTGATGTTTCAAACATCAATCGGTCCTTCTGGTTTGAGCCCTGGGTATATGCGCCCTGAAACA GCTCAGGGCATATTTGTTAATTTTAAGGATTTGTACTATTACAATGGGAACAAGCTCCCCTTTGCTGCTGCTCAAATTGGTCAGGCTTTCAGAAATGAGA TTTCTCCCCGCCAAGGCCTTTTAAGAGTCCGTGAATTCACATTAGCAGAGATTGAGCACTTTGTCGATCCTGAGTACAAATCTCACCCAAAATACTCTGA AGTTGCAGATCTTGAATTCCTGATGTTCCCAAGAGAACTACAAATCTCTGCCCAGTCTGCAAAGAAAATTCAGCTTGGTGAAGCTGTTTCTAAGGGAATT GTCAACAATGAAACTCTCGGCTATTTCATTGGGAGAGTGTATCTTTTCCTAACTCGTCTTGGTATAGACAAAGACCGATTGCGATTCCGGCAGCATCTTG CAAATGAAATGGCCCACTATGCCGCAGACTGTTGGGATGCTGAGATTGAGTCTTCATATGGTTGGATTGAGTGTGTTGGTATTGCAGATAGATCTGCATA TGACTTGCATGCTCACTCGGAAAAAAGTGGAGTTCCTCTTGTAGCCCACGAAAAATTTTCAGAACCGAAGGAGGTGGAGAAATTGGTTATAGCACCAGTG AAGAAAGAGCTGGGGCTTGCTTTTAAGGGTAACCAAAAAAAGGTGGTTGAAGCTTTGGAGGCAATGAACGAAAAAGAAGCTTTGGACATGAAGGCCTCTC TGGAAACCAAAGGAGAGGTAGAATTTTATGTTTGCACTCTTGGGGAAAAGGTAACAATTAAGAAGAACATGGTGTCAATTTCAAAGGAGAAGAAGAAGGA ACACCAAAGAACTTTCACGCCATCAGTAATCGAACCATCTTTTGGCATTGGGCGTATAATCTATTGTCTCTATGAGCACTCTTTCTACATGAGGCCCAGT AAAGCTGGGGATGAGCAGCTGAATGTTTTCCGTTTTCCTCCTCTTGTGGCACCTATAAAGTGCACTGTGTTTCCACTCGTCCAGAATCAGCAGTATGAGG ATGTTGCCAAAATCATTTCTAAGACGTTGACTGCTGCTGGAATCTCTCATAAGATTGACATTACAGGTACCTCAATCGGTAAACGATATGCAAGAACAGA TGAACTGGGGGTTCCCTTTGCGATAACAGTTGATTCAATATCCTCTGTGACAATCAGGGAGAGGGATAGCAAGGATCAAATCCGTGTTGATGTGGAAGAA GCGGCACCAGTTGTGAAGTCGGTAACTGATGGACACAAGACATGGGCTGATGTGTGGGCTAATTTCCCTCATCACTCCTCTGGATCTGTAGAGGATTAG
AA sequence Show only first row Show all	>Potri.003G162300.1 pacid=42785974 polypeptide=Potri.003G162300.1.p locus=Potri.003G162300 ID=Potri.003G162300.1.v4.1 annot-version=v4.1 MRILISLVSSSTLIDLLSFSRRLHTKISPFSTLIHHKPSPAMAASEDSLRRALAEKQSSIESQGNTVRALKASNAEKATVDEAIEKLNALKLDKSVMEKQ LQAAVNGNGPDGSVNKEAFRQAVVNTLERRLFYIPSFKIYRGVAGLYDYGPPGCAVKSNVLSFWRQHFVLEENMLEVDCPCVTPEVVLKASGHVDKFTDL MVKDEKTGTCCRADHLLKDFCNEKIQKDLSISAEKAAELKHVLAILDDLSAEELGAKIKEYGITAPDTKNPLSDPYPFNLMFQTSIGPSGLSPGYMRPET AQGIFVNFKDLYYYNGNKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEYKSHPKYSEVADLEFLMFPRELQISAQSAKKIQLGEAVSKGI VNNETLGYFIGRVYLFLTRLGIDKDRLRFRQHLANEMAHYAADCWDAEIESSYGWIECVGIADRSAYDLHAHSEKSGVPLVAHEKFSEPKEVEKLVIAPV KKELGLAFKGNQKKVVEALEAMNEKEALDMKASLETKGEVEFYVCTLGEKVTIKKNMVSISKEKKKEHQRTFTPSVIEPSFGIGRIIYCLYEHSFYMRPS KAGDEQLNVFRFPPLVAPIKCTVFPLVQNQQYEDVAKIISKTLTAAGISHKIDITGTSIGKRYARTDELGVPFAITVDSISSVTIRERDSKDQIRVDVEE AAPVVKSVTDGHKTWADVWANFPHHSSGSVED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29880			glycyl-tRNA synthetase / glyci...		Potri.003G162300 [exp]	0	1	GLYRS.2
AT4G13780			methionine--tRNA ligase, putat...		Potri.017G057700 [exp]	2.23	0.8249
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	2.44	0.8815
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132450 [exp]	2.82	0.8585
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	5.47	0.8124
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	5.74	0.8100	Pt-PURE.2
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.016G036100 [exp]	6.00	0.8313
AT3G21465			unknown protein		Potri.008G205300 [exp]	9.16	0.8244
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	9.79	0.8287
AT5G02050			Mitochondrial glycoprotein fam...		Potri.016G102200 [exp]	12.00	0.8147	SDH4.2
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.011G089000 [exp]	13.00	0.8046

Compare expression of checked genes

Potri.003G162300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.