Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57820 813 / 0 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G39550 743 / 0 ORTH1, VIM3 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66040 725 / 0 ORTH4, VIM4 VARIANT IN METHYLATION 4, ORTHRUS 4, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G57800 724 / 0 ORTH3, VIM5 VARIANT IN METHYLATION 5, ORTHRUS 3, zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66050 723 / 0 ORTH5, VIM2 VARIANT IN METHYLATION 2, ORTHRUS 5, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G08590 459 / 2e-156 VIM6, ORTHL, ORL1 VARIANT IN METHYLATION 6, ORTHRUS-LIKE 1, ORTH-LIKE 1, ORTHRUS-like (.1.2) AT5G13960 91 / 1e-18 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 76 / 6e-14 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 75 / 1e-13 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G04940 74 / 1e-13 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G067700 [exp] 1165 / 0 AT1G57820 811 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.002G237950 [exp] 91 / 8e-19 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 91 / 9e-19 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.008G173100 [exp] 85 / 9e-17 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 83 / 2e-16 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G083100 [exp] 79 / 7e-15 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 75 / 1e-13 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.001G036800 [exp] 71 / 1e-12 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 70 / 3e-12 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039127 [exp] 749 / 0 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10038731 [exp] 375 / 2e-121 AT1G57800 611 / 0.0 VARIANT IN METHYLATION 5, ORTHRUS 3, zinc finger (C3HC4-type RING finger) family protein (.1) Lus10031984 [exp] 93 / 2e-19 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 84 / 1e-16 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 75 / 1e-13 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10003017 [exp] 74 / 2e-13 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10014457 [exp] 74 / 3e-13 AT2G33290 444 / 2e-149 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) Lus10035115 [exp] 73 / 4e-13 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10023714 [exp] 73 / 4e-13 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Lus10001011 [exp] 73 / 5e-13 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Potri.003G162400.1 pacid=42786194 polypeptide=Potri.003G162400.1.p locus=Potri.003G162400 ID=Potri.003G162400.1.v4.1 annot-version=v4.1 ATGGAACTCCCGTGCGACGGAGCCGGCATTTGCATGGTCTGCAAAAACAAGCCACCAAGTGAAGAGACCCTCGCGTGCAAAACATGTGTCACCCCCTGGC ACGCCACGTGTCTCGTCTCCCCCCCTCAGGCGCTATCTGATACGCTGCAATGGGAGTGCCCTGACTGCTCCATGATTCATCCGCCGTCCACCTCCGCCTT CGCCTCCGGAAGATCGGAGGATTCCGGTGATCTCATCGCGTCGATTCGGAAGATCGAGGATGACAAATCGTTGACTGAACAGGAGAAGGCAAAGAAACGT CAGGAGCTGTTGAGTGGCGCCGCCGCTGGTCCGTCCTCATTGGACGGCGAGGAAAAGAAAGAGAAGAATGACGTCCTTGATATACTCGATAAGGAGTTGA CTTGCTCTTTCTGCATGCAAATGCTTGATAGACCGGTTACAACTCCATGCGGTCATAACTTTTGCTTGAAGTGCTTCCAGAGATGGATTGGACAAGGGAA ACGTACATGTGCATATTGCCGTGTACAAATCCCACCCAAGATAGCAAGCCAGCCTCGTATCAATTCTACACTTGTTATTGCCATACGTATGGCAAGGATG TCAAGATCCAGCAATGCTGGGGGTGCTGCGAAGGTATATCATTTTGTCCACAACCAAAACAGGCCAGACAAAGCATACACAACAGAGCGGGCAAAGAAAG CTGGCAAGGCTAATGCTTGTAGTGGGAAGATCTTTGTCACAGTTGCTCCTGATCACTTTGGGCCAATCCCTGCAGAGAACGACCCAGAAAGAAATATGGG TGTTTTGGTGGGAGAGATATGGGAGGATAGGCTGGCATGCAGGCAATGGGGTGCCCATCTCCCCCATGTTGCAGGAATTGCTGGTCAGTCTACTTATGGC GCGCAATCGGTGGCTCTTTCTGGAGGTTATATTGATGACGAGGACCATGGTGAATGGTTTCTTTACACTGGGAGTGGAGGAAGGGACCTGAGCGGCAATA AACGCACAAACAAGGACCAGTCCTTTGACCAAAAGTTTGACAAGATGAACGAGGCACTACGATTAAGCTGCCTAAAGGGCTATCCTGTAAGAGTGGTTAG GTCTCACAAAGAGAAGCGATCATCATATGCTCCAGAAACAGGTGTGCGTTATGATGGGGTTTATAGAATTGAGAAGTGTTGGCGTAAGAATGGAATACAG GGCTTTAAAGTTTGCAGGTATCTCTTTGTCAGATGCGACAACGAGCCTGCTCCATGGACGAGTGATGTTCAAGGGGACCGTCCGAGGCCTCTGCCTGTCA TCAAGGAATTAAAGAATGCAATTGATATAACTGAAAGGAAGGGGTCCCCTTCCTGGGACTATGAGGATGAAAAAAGTTGCTGGATGTGGAAAAAGCCACC TCCAGCCAGTAAAAAAAGAGTTGCTGATAGTGTAGGTCCAGAAGATGGCAAAGTGATTAGGATAATCAAGCGACAAAAAGCAAATATATCTGTTAGAGAA AAACTTCTGAAAGAGTTTAGTTGTCAAATTTGCCGGAAGGTGATGGCCAATCCAATCACTACCCCATGTGCCCATAATTTCTGCAAAGCATGTCTTGAGG GTGCCTTTGCTGGCCAAAGTCTCACTAGACAAAGAGGTCAAGGAAGACGGACATTAAGAGCGCAAAAGAATGTTATGAAATGTCCATCATGTACTATTGA CATAGCTGACTTTCTTCAGAACCCACAGGTGAATCGGGAGTTGATGGGTGTCATAGAATCACTACAACAACAAGCTGAGCAGGAAAAACTGGACAACAAT TCAGAAGAGTGTAGTGAAGAGAGTGATGCCACTGAGCAACAACGAGATTTGGTTGCTGATGACCAAATTGCCGAAGAGCCAAAGGATGAATCCCAAAATG CACAGAAGCAGAAAAAAGAAACTGATGATGATGACATTATGGATCCATCATCAAATGTGCAGACAATGAGTCCAGGGAAGGAGCAAGAAGCCCCAACCAC TACTGATAGAGCCAGTCAATAA
AA sequence Show only first row Show all	>Potri.003G162400.1 pacid=42786194 polypeptide=Potri.003G162400.1.p locus=Potri.003G162400 ID=Potri.003G162400.1.v4.1 annot-version=v4.1 MELPCDGAGICMVCKNKPPSEETLACKTCVTPWHATCLVSPPQALSDTLQWECPDCSMIHPPSTSAFASGRSEDSGDLIASIRKIEDDKSLTEQEKAKKR QELLSGAAAGPSSLDGEEKKEKNDVLDILDKELTCSFCMQMLDRPVTTPCGHNFCLKCFQRWIGQGKRTCAYCRVQIPPKIASQPRINSTLVIAIRMARM SRSSNAGGAAKVYHFVHNQNRPDKAYTTERAKKAGKANACSGKIFVTVAPDHFGPIPAENDPERNMGVLVGEIWEDRLACRQWGAHLPHVAGIAGQSTYG AQSVALSGGYIDDEDHGEWFLYTGSGGRDLSGNKRTNKDQSFDQKFDKMNEALRLSCLKGYPVRVVRSHKEKRSSYAPETGVRYDGVYRIEKCWRKNGIQ GFKVCRYLFVRCDNEPAPWTSDVQGDRPRPLPVIKELKNAIDITERKGSPSWDYEDEKSCWMWKKPPPASKKRVADSVGPEDGKVIRIIKRQKANISVRE KLLKEFSCQICRKVMANPITTPCAHNFCKACLEGAFAGQSLTRQRGQGRRTLRAQKNVMKCPSCTIDIADFLQNPQVNRELMGVIESLQQQAEQEKLDNN SEECSEESDATEQQRDLVADDQIAEEPKDESQNAQKQKKETDDDDIMDPSSNVQTMSPGKEQEAPTTTDRASQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	0	1
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.002G052700 [exp]	1.41	0.8314
AT4G16807			unknown protein		Potri.003G080700 [exp]	3.46	0.7787
AT1G75800			Pathogenesis-related thaumatin...		Potri.005G240900 [exp]	3.74	0.7786
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.003G192400 [exp]	5.09	0.8416
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	9.16	0.7242	Pt-LECRK7.1
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	9.79	0.7760	SKS1.3
AT3G25100		CDC45	cell division cycle 45 (.1)		Potri.015G090600 [exp]	10.09	0.8011
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	11.00	0.7659
AT1G14900		HMGA	high mobility group A (.1)		Potri.010G109600 [exp]	12.04	0.7820
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.005G222700 [exp]	14.42	0.7280

Compare expression of checked genes

Potri.003G162400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.