Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28120 436 / 3e-155 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G067400 [exp] 524 / 0 AT1G28120 431 / 1e-153 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026630 [exp] 439 / 1e-156 AT1G28120 414 / 9e-147 unknown protein Lus10030429 [exp] 432 / 4e-154 AT1G28120 416 / 3e-147 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF10275 [poplar] [flax] Peptidase_C65 Peptidase C65 Otubain
Representative CDS sequence Show only first row Show all	>Potri.003G162600.1 pacid=42784751 polypeptide=Potri.003G162600.1.p locus=Potri.003G162600 ID=Potri.003G162600.1.v4.1 annot-version=v4.1 ATGCAGAATCAGGAAGGACAGTTAGCAGCAGATGGAGAAACAGAAGTGACTTGTGAAATCGAAGATTGGGCAAATTTTGGAGGAGGAGATGATGATATTA TGCAGCAGCAATCCAGTGTTCCATTTGTTGGCGACAAGGAGCCCTTGTCTGCATTGGCTGCTGAATATCAATCAGGCAGTCCTATTTTACTTCAGAAAAT AAAGGTGCTTGGTGACAAGTATGTTGCAATTAGGCGAACACGTGGAGATGGGAATTGCTTCTTTCGCAGCTTTATGTTTTCATACCTAGAGCATATTTTG GAGAAACAAGACCGTGCGGAAGTTGATCGTATCAAAGCAAATGTTGAAGAATGTAGGAAAACACTGCAGAGTTTGGGTTATGTGGACTTCACGTTCGAGG ATTTTTTTGCGTTATTTCTTGAGCAGCTGGATGATGTCCTTCAAGGAAATGAAACTTCAATAAGTCATGAAGAGCTTCTAAATAGGAGTCGTGATCAGTC CGTATCAGACTATGTTGTCATGTTTTTCAGATTTGTGACCTCTGGAGAAATAAGACGACGCTCAGAGTTTTTTGAACCCTTTGTATTTGGATTGACAAAC ACTACAGTTGAGCAGTTTTGCAAGTCATCAGTGGAACCTATGGGTGAAGAAAGTGACCATGTGCACATTACTGCACTATCTGATGCATTGGGTGTACCAA TTCGTGTTGTATATCTCGACCGCAGCTCTTGTGATGCAGCTGGTGTCAGTGTAAATCATCATGATTTCATTCCTACACCTCGCAATCTCCCAAGTGCTAC TGGTGCTGGTTCTGAGAGCATCAATCCCTTCATTACCTTGCTTTATCGTCCAGGTCACTATGACATTCTCTACCCAAAGTGA
AA sequence Show only first row Show all	>Potri.003G162600.1 pacid=42784751 polypeptide=Potri.003G162600.1.p locus=Potri.003G162600 ID=Potri.003G162600.1.v4.1 annot-version=v4.1 MQNQEGQLAADGETEVTCEIEDWANFGGGDDDIMQQQSSVPFVGDKEPLSALAAEYQSGSPILLQKIKVLGDKYVAIRRTRGDGNCFFRSFMFSYLEHIL EKQDRAEVDRIKANVEECRKTLQSLGYVDFTFEDFFALFLEQLDDVLQGNETSISHEELLNRSRDQSVSDYVVMFFRFVTSGEIRRRSEFFEPFVFGLTN TTVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDAAGVSVNHHDFIPTPRNLPSATGAGSESINPFITLLYRPGHYDILYPK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28120			unknown protein		Potri.003G162600 [exp]	0	1
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	1.00	0.7982
AT1G02410			cytochrome c oxidase assembly ...		Potri.001G078500 [exp]	2.82	0.7472
AT3G54640		TRP3, TSA1	TRYPTOPHAN-REQUIRING 3, trypto...		Potri.002G045700 [exp]	4.24	0.7005	TSA1.2
AT4G18950			Integrin-linked protein kinase...		Potri.004G064400 [exp]	5.74	0.6381
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Potri.009G072500 [exp]	6.48	0.6994	SAD1.1
AT1G12390			Cornichon family protein (.1)		Potri.001G116100 [exp]	9.27	0.7665
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	14.86	0.6769
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	16.43	0.6630
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.001G279900 [exp]	20.78	0.6788
AT4G34270			TIP41-like family protein (.1)		Potri.001G298500 [exp]	25.92	0.7502

Compare expression of checked genes

Potri.003G162600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.