Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 530 / 2e-180 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G35160 256 / 5e-74 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G22740 251 / 3e-72 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT1G73100 228 / 2e-64 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 214 / 1e-59 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT4G13460 208 / 9e-58 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 204 / 2e-56 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 184 / 5e-49 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 162 / 2e-41 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G23740 114 / 8e-26 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143900 [exp] 581 / 0 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.002G237950 [exp] 579 / 0 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 283 / 3e-82 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.001G036800 [exp] 222 / 2e-62 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 221 / 5e-62 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.006G027600 [exp] 214 / 1e-59 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 213 / 4e-59 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.008G173100 [exp] 213 / 4e-59 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 207 / 4e-57 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031984 [exp] 547 / 0 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 547 / 0 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 516 / 2e-173 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10001798 [exp] 486 / 5e-163 AT5G13960 446 / 8e-150 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10002571 [exp] 468 / 1e-156 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 259 / 1e-74 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 236 / 1e-67 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10001011 [exp] 240 / 5e-67 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 234 / 8e-65 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10029470 [exp] 225 / 2e-63 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0178 [poplar] [flax] PUA PF02182 [poplar] [flax] SAD_SRA SAD/SRA domain CL0178 [poplar] [flax] PF05033 [poplar] [flax] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Potri.003G162801.1 pacid=42786858 polypeptide=Potri.003G162801.1.p locus=Potri.003G162801 ID=Potri.003G162801.1.v4.1 annot-version=v4.1 ATGAAGAGTCCTTGCAAAGAAAGCAAGATTCCCAGTTATGAATGTATTAAGCAAGATCCTTCAAGTGAAGCAATTGACGTTTCTGTGACAAAGAACATTG CACAGCGAGTTCAAAAAGTTGAGTCCAGGGGGTCTCTAGAGAGAAGATGCAGCCCTAGGCTTAAAAATAAGCCTCAAGAGAAAAGGCCGTGCTATTTTGA AGGTCAGAGCACGAAGTTAGATGCTCCTGAACTCGATATCTGCAAGAAAGAAGTTGAAGGAGAGTCAACAGGGCCTGGAGAGAGAAGATGGTGTCCAAGA CTTGAAAGTATACCTGATAAGAGCAGGCCATTATATGATGGAGATCAGAGGAGGGAGTTAGATGCTCCTAAACATGATGTGTGCAAGAAAGAAACTGGAG ATTATAATCGGAAGAGACATTTAGAATCCCCTGGAGATAATGCTGGCAAGAGAAGGAGCTACATTAATCATCCAATGCAAGAATGGCTACCTGATATCGA TAGAAAAGGCGTAGAAGATGGGCTCAAAAGAAGTGGTCTGGCCCTTGGTTCCTTGCCTTTTAAATTTGATGACACAGAAATTGAGTTAGAAAACAATGCT AATCTGAAATGGACGGACTATCAAAGTTTTGTAGCTGATAGTATCAAACAGAAGGCCTGTACAGCAGTGAAAGAGACAGCAAGGACTTTTAATAATCATC ACCTTAGCTGTGTTCAGGAAGAAGAGAAGAGATATGAGAAGGTAGAGGCCAGAGATCCTCAGGTTGCTGATTATACTGATAATAAGGGAAATTCATCCAC TGCTAAGTGTACTTCAAAGCAACCAATTCTGAAGGAAATTTCCGAGGCGTCAAAGAAGAATGAACAATCATACACTGAAAAACAAGTTGCTTATCTACCT GGTATTACTGTTGGGCATAAATTCTTCTCTCGAGATGATATGGTGGCTACAGGTTTCCGTGGACATTGGTTGAATGGAATTGATTACATACGCAAGCTTT GTGGCAAATTGGGTAAGCACAACGAGTATAGCAGCCTGGTAGCAGTAGCAATCGTTTTGTCTGGACAATATCAAGATGGTGTTGATTGTTTAAATGAAGT AGTGTATACAGGCCAAGGCAGAAACAACATGAATGGTAGTAAGAGTCAAACTAAAGATCAAGTTATGCATTGTAGTAATTTGGCTCTTGAGAATAATATG GAGCAATCTGTACCTGTCAGGGTCATCTGTGAGCATAAACGTGGTGATAATCAAAGTGGCAAAGTTTACACATATTGTGGTTTGTACAAGGTTGTACGTT GCTGGTCTTTTAAAAGGGCTTCTGGATTTACTGTTTCTAAGTACCGTTTGAAACGACTTCAAGGGCAGCCCAAAGTTGAGATAGATGAGGTTTGTTTTGA ACGAGAAAGAACTATTGGCAAATTGCATGGCTTGGTTTGTGAGGACATCTCTTTTGGGAAAGAAGACATACCTATTCCTGTTATCAATGTAATTGATAAT CCTCCTATAGCACCTCCAGGCTTTAAATATATCAAGTCTGTTCAAGTTGCAAGAAATGTGATCATTCCTCCAAGTGCCTCTGGGTGTGATTGTAAAGGAA AATGTACAAATCCAAGGTCTTGTTCTTGTGCTCGACTTAATGGCTTTGACTTTCCATACGTGGACATAGATGGTGGCAGATTGATTGAAGCAAAGGATGT GGTGTTTGAATGTGGTCCTGGATGTAGCTGTGGACCTAGTTGCATTAACCGCGTCTCTCAGCGTGGATTGAAGTACCAACTTGAGATCTATCGTACAGCA GACAAAGGATGGGCTGTTAGGTCTTGGGATGTAATTCCTTCTGGTGCTCCAGTGTGTGAATACTTTGGAATTCTTAGGAGGAATGACGAGTTGGATAACG TCTCTGGGAATGAATTTATATTTGATATTGACTGCTGGCATACAATGAATGAAATAGGGGGAAGAGAGAGGCGACAAGGTGATGGGTCTGCACCTGCAAT TGATCCTCTGAAGAAAGTAGATGTCAAGATGGATGAAAGTGAATCTGAGTTTTGCATAGATGCGGGCTCTTATGGTAATGTTACCAGATTTATTAATCAT AGTTGTCAGCCCAACCTATTCGTCCAGTGCATTTTGAGCACCCACCATGATATCCGACTTGCTCGAATTGTGCTATTTGCAGCAGACGATATACTTCCTA TGCAAGAACTTACTTATGACTATGGCTACGCGCTTGATAGCGTTGTTGGTCCTGATGGGAAACTAAAACAGTCGCCATGCTACTGTGGCACAGATGAGTG TCGGGGGCGCTTATATTAG
AA sequence Show only first row Show all	>Potri.003G162801.1 pacid=42786858 polypeptide=Potri.003G162801.1.p locus=Potri.003G162801 ID=Potri.003G162801.1.v4.1 annot-version=v4.1 MKSPCKESKIPSYECIKQDPSSEAIDVSVTKNIAQRVQKVESRGSLERRCSPRLKNKPQEKRPCYFEGQSTKLDAPELDICKKEVEGESTGPGERRWCPR LESIPDKSRPLYDGDQRRELDAPKHDVCKKETGDYNRKRHLESPGDNAGKRRSYINHPMQEWLPDIDRKGVEDGLKRSGLALGSLPFKFDDTEIELENNA NLKWTDYQSFVADSIKQKACTAVKETARTFNNHHLSCVQEEEKRYEKVEARDPQVADYTDNKGNSSTAKCTSKQPILKEISEASKKNEQSYTEKQVAYLP GITVGHKFFSRDDMVATGFRGHWLNGIDYIRKLCGKLGKHNEYSSLVAVAIVLSGQYQDGVDCLNEVVYTGQGRNNMNGSKSQTKDQVMHCSNLALENNM EQSVPVRVICEHKRGDNQSGKVYTYCGLYKVVRCWSFKRASGFTVSKYRLKRLQGQPKVEIDEVCFERERTIGKLHGLVCEDISFGKEDIPIPVINVIDN PPIAPPGFKYIKSVQVARNVIIPPSASGCDCKGKCTNPRSCSCARLNGFDFPYVDIDGGRLIEAKDVVFECGPGCSCGPSCINRVSQRGLKYQLEIYRTA DKGWAVRSWDVIPSGAPVCEYFGILRRNDELDNVSGNEFIFDIDCWHTMNEIGGRERRQGDGSAPAIDPLKKVDVKMDESESEFCIDAGSYGNVTRFINH SCQPNLFVQCILSTHHDIRLARIVLFAADDILPMQELTYDYGYALDSVVGPDGKLKQSPCYCGTDECRGRLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.003G162801 [exp]	0	1
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	1.41	0.9031	AGO902
AT3G14470			NB-ARC domain-containing disea...		Potri.018G003502 [exp]	2.44	0.8657
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	3.87	0.8367
AT5G48920		TED7	tracheary element differentiat...		Potri.005G060700 [exp]	10.58	0.7520
AT5G55760		SRT1	sirtuin 1 (.1)		Potri.001G368100 [exp]	12.96	0.7401
AT1G15780			unknown protein		Potri.003G013300 [exp]	16.24	0.7354
AT3G15160			unknown protein		Potri.011G135800 [exp]	18.46	0.7649
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	22.51	0.7530
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.016G075300 [exp]	23.23	0.6934
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Potri.001G237100 [exp]	26.15	0.7154

Compare expression of checked genes

Potri.003G162801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.