Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33550 340 / 9e-117 Trihelix Homeodomain-like superfamily protein (.1) AT2G35640 74 / 2e-14 Trihelix Homeodomain-like superfamily protein (.1) AT4G31270 69 / 6e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G31310 59 / 1e-09 Trihelix hydroxyproline-rich glycoprotein family protein (.1) AT5G51800 53 / 2e-07 Trihelix Protein kinase superfamily protein (.1) AT1G76890 49 / 2e-06 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G33240 48 / 7e-06 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT3G10000 47 / 9e-06 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G76880 46 / 4e-05 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G03680 42 / 0.0004 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066900 [exp] 560 / 0 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1) Potri.015G105800 [exp] 253 / 4e-82 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1) Potri.012G106650 [exp] 72 / 1e-15 AT2G33550 65 / 8e-14 Homeodomain-like superfamily protein (.1) Potri.012G117500 [exp] 69 / 6e-13 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.018G002801 [exp] 57 / 1e-08 AT4G31270 154 / 4e-43 sequence-specific DNA binding transcription factors (.1) Potri.006G279100 [exp] 56 / 2e-08 AT4G31270 145 / 5e-40 sequence-specific DNA binding transcription factors (.1) Potri.008G025600 [exp] 48 / 9e-06 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.010G235000 [exp] 47 / 1e-05 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.012G132300 [exp] 45 / 7e-05 AT5G51800 866 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020182 [exp] 62 / 2e-10 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1) Lus10026986 [exp] 60 / 8e-10 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10041120 [exp] 52 / 3e-07 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1) Lus10033504 [exp] 49 / 3e-06 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 47 / 1e-05 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10027398 [exp] 45 / 6e-05 AT5G51800 842 / 0.0 Protein kinase superfamily protein (.1) Lus10028584 [exp] 45 / 6e-05 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10031672 [exp] 44 / 0.0001 AT5G51800 885 / 0.0 Protein kinase superfamily protein (.1) Lus10018283 [exp] 40 / 0.0003 AT2G35640 93 / 6e-24 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G163000.1 pacid=42786985 polypeptide=Potri.003G163000.1.p locus=Potri.003G163000 ID=Potri.003G163000.1.v4.1 annot-version=v4.1 ATGGCTCTAGAGCAGCAATTAAACTTAACCCCAACTCAAAACTCCGTTGACGGCGAAAGAACTAACGGCGTTGACACCAGCATCCGTGACGGCGGAGATG ACGGGAACAAAGCACCGAGACTCCCTCGTTGGACCCGGCAAGAAATCCTAGTACTCATACAGGGCAAGAGAGTGGCAGAAAACAGAGTCCGAAGAGGTCG GGCGTCGGGTATGGGCATCGGGCCGGGTCAAGTGGAACCAAAATGGGCTTCAGTATCTACTTACTGTAAAAAACATGGGGTGAACCGGGGACCGGTTCAG TGTCGCAAAAGATGGAGCAATTTAGCTGGTGATTATAAGAAGATAAAGGAATGGGAGGCTTCAATAAGAGATGAAACGGAGTCGTTTTGGTTCATGAGGA ATGATTTGAGAAGGGAAAAGAAGTTACCTGGGTTTTTTGATAGGGAGGTCTATGATATACTCGATGGTGGTGGTGGTACGGTCCAGGGATTGGCACTAGC TTTGGCGCCATCTTCGGCGGCGGTAGAGGCGGAGACAATAGCGGAGGGGGTGGTTTTTGATAGTGGACGGAGTGCAGCGGCGGAGGATGGGTTGTTTTCG GATTTTGAGCAAGAGGAAGGAGGAAGGAGTCCGGAGGCGGTAGTTAAGGAGTTGCAGCCGATAAAGGCGGCGGTTGCTATTCCGACGCCGATTTCAGAGA AACAGTACCAACCAGCTCCACAAGCAAGTCAAGCTCAAGGTTCACTAAATGATAAGAGACCTTCTACAAATCCTGAGATGGGTTCTGCTTCACATGAGGA TCGGAAACGAAAACGGTTTGCAATAGATGGGGGTGAGGAAACCATCAGCTCACATAGCCATTTGATTCATGTCTTGGAAAGGAATGGCAAGATGCTGACC GCTCAGCTTGAAGCTCAGAACACCAATTTTCAGTTGGACCGGGAGCAGAGGAAGGACCATGCAGATGGCTTGGTTGCTGTTCTTAATAAGCTTGCGGATG CCCTTGGGAAAATAGCTGATAAGTTGTAG
AA sequence Show only first row Show all	>Potri.003G163000.1 pacid=42786985 polypeptide=Potri.003G163000.1.p locus=Potri.003G163000 ID=Potri.003G163000.1.v4.1 annot-version=v4.1 MALEQQLNLTPTQNSVDGERTNGVDTSIRDGGDDGNKAPRLPRWTRQEILVLIQGKRVAENRVRRGRASGMGIGPGQVEPKWASVSTYCKKHGVNRGPVQ CRKRWSNLAGDYKKIKEWEASIRDETESFWFMRNDLRREKKLPGFFDREVYDILDGGGGTVQGLALALAPSSAAVEAETIAEGVVFDSGRSAAAEDGLFS DFEQEEGGRSPEAVVKELQPIKAAVAIPTPISEKQYQPAPQASQAQGSLNDKRPSTNPEMGSASHEDRKRKRFAIDGGEETISSHSHLIHVLERNGKMLT AQLEAQNTNFQLDREQRKDHADGLVAVLNKLADALGKIADKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	0	1
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	4.12	0.8598
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	4.69	0.8589
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Potri.006G061500 [exp]	6.92	0.8512
AT1G11360			Adenine nucleotide alpha hydro...		Potri.011G039800 [exp]	10.81	0.8132
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	12.32	0.8460
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.001G314000 [exp]	13.26	0.8107
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	14.28	0.8352
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	14.42	0.8439
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.006G065100 [exp]	16.24	0.8303
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.002G131300 [exp]	17.32	0.8490

Compare expression of checked genes

Potri.003G163000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.