Plant FIBer expression Database

Potri.003G163100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13310 129 / 2e-33 unknown protein
AT5G13970 103 / 7e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G143800
[exp]
164 / 8e-46 AT5G13970 217 / 3e-66 unknown protein
Potri.002G238100
[exp]
154 / 3e-42 AT5G13970 204 / 2e-61 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035116
[exp]
134 / 8e-35 AT5G13970 211 / 4e-64 unknown protein
Lus10031983
[exp]
126 / 4e-31 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15264 TSSC4 Tumour suppressing sub-chromosomal transferable candidate 4
Representative CDS sequence
>Potri.003G163100.1 pacid=42784703 polypeptide=Potri.003G163100.1.p locus=Potri.003G163100 ID=Potri.003G163100.1.v4.1 annot-version=v4.1
ATGGAGAACAGTTTCAGAGACCGAGTTGATAAAATCTTCGGCTCTCTCACGCCCTCTTCTTCGTCTAAACCAGAACCTTCTTCGTCTAAACCACAACCTT
CTTCGTCTCTCCAATCAGGTTTATGGTCTCTCACCGACGATGCGATCGAGAGGAAAGAGTGGAAGAGAGACGCTTCTTCTCTCTCTGCATCCTTCGATAG
AGACGAAATACCCTGCGCCGCGTCTTTTGACAAGTTAAAAAAGGGGAGGAAAAAGAAGAACTTTGAGCTTGATGATGACATGGATGAGCTTGATGATGAC
GAAGACGATGGAGAGTTGAACCGGTCGGAAGATGGTTTGGAGGATTGGGAGATTCGATCCTCGATTGGTTTGGACCCTACTCTTGATAATGAGGAGGAGG
AAGATGAGTATGATAAAGTGGCTGAGGGAAGAGAAAATGCTGGAGAGCGCATGTATATGAAGGATGTTACTGATCAAGGGTCTTATTTAAACTATTACAA
TGTGATTTCCAAGTCATTACATGCTAATAGGGATTCACGTGCCAATCACCTGGCAGCAGAAATTAGGCTGCAAGAAGATCAAGTTGAAGCTCAAACACTA
AATTCTCACAATGATTGTGATAAAGCTATAGAATGCCAGGCAAAGGCATCCAACGAATGTGGTGGTGGGCAACTGAAGTCTATATTGAAAAGGAAACAGT
ATAATTCAGATTTCAAGTCATGCAAACGTGTCAGGTTTGAACCTGGTTGTGGAACTGTACATAAAGAAGAAGCATCGGTAGAAATTCAAGACATTTCCAT
CAACACCTCTTCAGCAAATGATTTGGTTTCAGAAGATCGATCCTTCACTGTTCAGAATGCTCCTGGAGTTCCAGATTATTTAAGGAATCCTTCAAAGTAT
ACCCGTTACAGTTTTGATCCATCCACTGAAGTTGATGAAAAATCCAATACTCGAGCTTATATGGACTTTAGTAAGCTGGTCAAACATTCTAAATCCACAG
AATCAGAGCTGGAGGAAGCTTCATCTGATCTTCCAAAATCGGTGACCTTTATCCCAAAGAAAAAGGCAGATGAAATAAAAGCTGTAACTAGTGACAGCAT
GGTTAAGCAGGATAAGGGACATCATAACGATCACCATGCGTATGCCCCAAACTTCCCTATTAGCATTGCAGCTGGGGAATCCCAAGAGTCTGAAGCTGGT
GCTGTGGCGGAAAATGAACCAGAAAGAAATATCGTAGACAGAAATAATAGTTCCCATAAACCTGCTCGCAGGTATCGAACAAAGTCAAGCTCGGATGACT
TTGATCCTTGA
AA sequence
>Potri.003G163100.1 pacid=42784703 polypeptide=Potri.003G163100.1.p locus=Potri.003G163100 ID=Potri.003G163100.1.v4.1 annot-version=v4.1
MENSFRDRVDKIFGSLTPSSSSKPEPSSSKPQPSSSLQSGLWSLTDDAIERKEWKRDASSLSASFDRDEIPCAASFDKLKKGRKKKNFELDDDMDELDDD
EDDGELNRSEDGLEDWEIRSSIGLDPTLDNEEEEDEYDKVAEGRENAGERMYMKDVTDQGSYLNYYNVISKSLHANRDSRANHLAAEIRLQEDQVEAQTL
NSHNDCDKAIECQAKASNECGGGQLKSILKRKQYNSDFKSCKRVRFEPGCGTVHKEEASVEIQDISINTSSANDLVSEDRSFTVQNAPGVPDYLRNPSKY
TRYSFDPSTEVDEKSNTRAYMDFSKLVKHSKSTESELEEASSDLPKSVTFIPKKKADEIKAVTSDSMVKQDKGHHNDHHAYAPNFPISIAAGESQESEAG
AVAENEPERNIVDRNNSSHKPARRYRTKSSSDDFDP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G13310 unknown protein Potri.003G163100
[exp]
0 1
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.002G189700
[exp]
1.73 0.8592
AT4G10810 unknown protein Potri.002G173700
[exp]
3.74 0.8625
AT4G25210 GeBP DNA-binding storekeeper protei... Potri.001G293900
[exp]
4.47 0.8546
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Potri.008G059600
[exp]
4.58 0.8424
AT5G16220 Octicosapeptide/Phox/Bem1p fam... Potri.017G119100
[exp]
5.65 0.8583
AT2G44200 CBF1-interacting co-repressor ... Potri.006G000200
[exp]
5.91 0.8675
AT5G58020 unknown protein Potri.018G109800
[exp]
8.48 0.8255
AT1G52520 FAR1_related FRS6 FAR1-related sequence 6 (.1) Potri.003G031400
[exp]
8.83 0.8173
AT1G03910 unknown protein Potri.006G118700
[exp]
13.85 0.8408
AT5G02320 MYB MYB3R-5, ATMYB3... ARABIDOPSIS THALIANA MYB DOMAI... Potri.006G085600
[exp]
14.69 0.7733 MYB211,Pt-MYB3.1

Potri.003G163100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.