Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13290 484 / 3e-171 SOL2, CRN SUPPRESSOR OF LLP1 2, CORYNE, Protein kinase superfamily protein (.1.2.3) AT2G31880 204 / 1e-59 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT2G35620 187 / 2e-53 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT5G62710 186 / 2e-53 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 184 / 1e-52 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT1G78530 176 / 1e-51 Protein kinase superfamily protein (.1) AT5G49660 176 / 3e-48 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 172 / 4e-47 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G61480 172 / 4e-47 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G60800 170 / 4e-47 NIK3 NSP-interacting kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066700 [exp] 703 / 0 AT5G13290 488 / 1e-172 SUPPRESSOR OF LLP1 2, CORYNE, Protein kinase superfamily protein (.1.2.3) Potri.015G086800 [exp] 223 / 1e-66 AT2G31880 804 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.012G090500 [exp] 221 / 6e-66 AT2G31880 784 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 182 / 1e-51 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G071100 [exp] 182 / 1e-51 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G117500 [exp] 180 / 8e-50 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G105000 [exp] 176 / 1e-49 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G021700 [exp] 179 / 2e-49 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G380800 [exp] 167 / 3e-48 AT1G78530 535 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017963 [exp] 219 / 3e-65 AT2G31880 745 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10041953 [exp] 216 / 3e-64 AT2G31880 741 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10013675 [exp] 214 / 2e-63 AT2G31880 781 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033041 [exp] 213 / 9e-63 AT2G31880 783 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 187 / 2e-53 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 186 / 3e-53 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10036672 [exp] 185 / 7e-53 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005569 [exp] 173 / 1e-50 AT1G78530 462 / 2e-164 Protein kinase superfamily protein (.1) Lus10027951 [exp] 176 / 2e-48 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000814 [exp] 176 / 3e-48 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G163300.1 pacid=42786381 polypeptide=Potri.003G163300.1.p locus=Potri.003G163300 ID=Potri.003G163300.1.v4.1 annot-version=v4.1 ATGGAGAAAAGAAGATACAGTCTTCGAGTTAGCAATAGCAAAGTCACAGCTTCGCTGCTTTTTCTGTTCGTTCTTTGCTTGTACTACGCAAGTGTACAAT GTCAAGAAAGTAGTAAAGTCACACCTCCATCTCCTTCTACTCCAACCCAATCCAAGAATGGACTCAAGAGAATACTTGTAAGCATCTTCTTAGGAGTCTT GACTGGATTAATAGGAGCCGTTGTTTTTGCTTTTGTAGTCCGTTTCTTGGTCCGGTACATGAAGAGAACTCCGATTCTCAAAGGCCCAGTTATATTTTCT CCAAAAATCACTCCTAAAAGTCTTCAATCAGCTCTTGAAAATGAGAATCAATTGCTAGGTTCAAGCTCCAATGGAAAGTATTACAGGACTGCACTGGACA ATGGGCTAACCATTGCTGTCAAGAGGTTCGAGCCATTTGAGATTGGCTCCCCTGAGAGGCAGAGCAAATCAGTAAAGAGAAGGATACAGCAGGAGCTGGA AATGCTAGCTAGTTTGAGACATCGGAATCTGATGAGTTTAAGGGCTTATGTTCGCGAGCCAGATAGGTTCTCTTTGGTTTATGATTATGTGCCAACCGGG AGTCTTGAAGATGCAATGAATAGAGTGAGAGAGAATGAGTTGCAACTTGGATGGGAAGTTCGGCTTCGGATTGCCGTTGGGGTTATTAAAGGGCTTAGGT ATCTTCATTTCGAATGCGCCCCTCAGATTTTGCATTATAATTTGAAGCCCAGGAATGTGATTTTGGATGCTGAGTTTGAACCAAGGTTGGCTGATTTTGG ACTGGCTAAGCTTACGCCTAATTTGGATAGAGCTACGTCTGGATATAGTGCTCCTGAGTGTTTCCAAGATTGCAGGTACTCGGATAAAAGTGATGTTTTC AGCTTTGGGATGATATTGGGTGTTTTGCTAACTGGGAGAGACCCTACAGATCCATTCTTTGGGGAAACAGCTAGTGGCGGTAGTTTGGGTCGTTGGCTTC GACATTTGCAACAAGCAGGGGAGGCGCGAGAGGCGCTTGATAAGAGTCTTCTTGGGGAAGAAGTTGAGGAAGATGAGATGCTTATGGCAGTGAGAATTGC TGTTGTTTGTCAATCAGAAATGCCTGCAGATAGGCCTTCAAGTGACGAGCTTGTCCCCATGCTATCTCAACTGCACAGTTTTTAA
AA sequence Show only first row Show all	>Potri.003G163300.1 pacid=42786381 polypeptide=Potri.003G163300.1.p locus=Potri.003G163300 ID=Potri.003G163300.1.v4.1 annot-version=v4.1 MEKRRYSLRVSNSKVTASLLFLFVLCLYYASVQCQESSKVTPPSPSTPTQSKNGLKRILVSIFLGVLTGLIGAVVFAFVVRFLVRYMKRTPILKGPVIFS PKITPKSLQSALENENQLLGSSSNGKYYRTALDNGLTIAVKRFEPFEIGSPERQSKSVKRRIQQELEMLASLRHRNLMSLRAYVREPDRFSLVYDYVPTG SLEDAMNRVRENELQLGWEVRLRIAVGVIKGLRYLHFECAPQILHYNLKPRNVILDAEFEPRLADFGLAKLTPNLDRATSGYSAPECFQDCRYSDKSDVF SFGMILGVLLTGRDPTDPFFGETASGGSLGRWLRHLQQAGEAREALDKSLLGEEVEEDEMLMAVRIAVVCQSEMPADRPSSDELVPMLSQLHSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	0	1
AT5G66600			Protein of unknown function, D...		Potri.007G033100 [exp]	2.00	0.8819
AT1G11915			unknown protein		Potri.004G007400 [exp]	2.23	0.8861
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.007G007400 [exp]	2.44	0.8459
AT4G32785			unknown protein		Potri.018G042000 [exp]	3.16	0.8475
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.017G139000 [exp]	3.16	0.8214
AT5G45540			Protein of unknown function (D...		Potri.015G116600 [exp]	5.74	0.8580
AT5G19670			Exostosin family protein (.1)		Potri.018G085400 [exp]	6.00	0.8259
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.017G108000 [exp]	7.21	0.8487
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	7.74	0.8020
AT2G28790			Pathogenesis-related thaumatin...		Potri.009G028800 [exp]	8.83	0.8038

Compare expression of checked genes

Potri.003G163300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.