Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 691 / 0 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 457 / 3e-151 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 431 / 9e-140 ARF ARF4 auxin response factor 4 (.1) AT4G23980 422 / 5e-138 ARF ARF9 auxin response factor 9 (.1.2) AT2G46530 421 / 5e-138 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 409 / 1e-133 ARF ARF18 auxin response factor 18 (.1) AT1G35540 347 / 2e-109 ARF ARF14 auxin response factor 14 (.1) AT1G34410 342 / 6e-108 ARF ARF21 auxin response factor 21 (.1) AT1G34390 341 / 2e-107 ARF ARF22 auxin response factor 22 (.1) AT2G33860 340 / 5e-107 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066200 [exp] 1203 / 0 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 711 / 0 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 706 / 0 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.004G228800 [exp] 526 / 5e-178 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.001G088600 [exp] 513 / 2e-172 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 508 / 2e-170 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.014G135300 [exp] 468 / 1e-154 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G001000 [exp] 458 / 1e-151 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.002G207050 [exp] 449 / 4e-147 AT5G62000 454 / 4e-148 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043200 [exp] 686 / 0 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 684 / 0 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 463 / 3e-153 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 456 / 1e-150 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 436 / 4e-143 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032413 [exp] 372 / 4e-123 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10005264 [exp] 353 / 4e-111 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10013942 [exp] 352 / 5e-111 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10007386 [exp] 340 / 1e-104 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 338 / 3e-104 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.003G163600.5 pacid=42785491 polypeptide=Potri.003G163600.5.p locus=Potri.003G163600 ID=Potri.003G163600.5.v4.1 annot-version=v4.1 ATGATTAACGGAAGTAATTCTGTGGATATTAACCGCAATGGAATTGCGAGCAGGAGCTGGAGTTTTCCGGTGGCTTGTGAAGGATCAGAAGATGCACTGT ACAAGGAGCTATGGCACGCGTGTGCAGGTCCGTTAGTGACAGTGCCTCGCCAAGGAGAGCTTGTTTACTACTTTCCTCAAGGTCATATTGAGCAGGTTGA AGCATCGACGAATCAGGTTGCTGATGATCAGCAAATGCCAGCTTATAATCTCTCTCCGAAAATCCTCTGTCGTGTGGTTAATGTTCAATTGAAGGCTGAA CTGGATACAGATGAAGTGTTTGCTCAAGTCATTTTGCTTCCTGAAACTCAACAAGATGTGGAGTTGGTGGAGGAGGAGGATTTGCCGCCTCTGCCTGCAC GTCCTCGGGTGCATTCCTTCTGTAAGATGCTTACAGCGTCGGATACAAGCACTCATGGTGGATTTTCAGTATTGAAACGGCATGCTGATGAATGCCTACC TCCATTGGACATGTCCCTACAACCTCCAGTGCAGGAGTTGGTAGCCAAAGATTTGCATGGAAATGAGTGGCGTTTCCGCCATATATTTCGAGGTCAACCA CGAAGGCACCTTCTTCAAAGTGGTTGGAGTCTCTTTGTCAGTGCCAAAAAGCTCGTGGCAGGAGATGCTTTTATTTTTCTTAGGGGTGAAACTGAAGAGC TTCGTGTAGGGGTAAGACGTGCCCTGAGACAGCCAAGCAAAATCCCTTCTTCTTTAATATCTAGTCACAGCATGCATATTGGTATCCTTGCAACTGCATG GCATGCTGTTTCAACAGGATCAATGTTCACTGTCTATTATAAACCAAGGACTAGTCCTGCTGAGTTTATTATTCCAGTTGACAAATATATGGAGTCTGTC AAGATCAACTACGCTATAGGGATGAGATTCAAAATGAGATTTGAAGCAGACGATGCTCCCGAACAAAGGTTCTCTGGCACTGTGATTGGAGTCGAAGAGG CAGATCCAAAGAAGTGGCCTCGCTCAAATTGGAGATGCCTCAAGGTTCATTGGGATGAAACTTCTCCTGTTCACCGTCCAGACAGGGTTTCCCCTTGGAA AGTAGAACCTGCTTTGGCTCCTTCTATGGATCCCGTTTCTGGGTGCCGATTGAAAAGGCACCGTCCAAACACGGTGACATCATCTGCAGACTCCTCTGCT CTTACCAAGAAAGATAACGGTCCTTCAAGACACATGCAACATCAAGAAATCTTGACCTTGAGAAACACACCTACTGGGAAGAATTACTCGGACAATAATC ACAATCCTCCATGGGTTCTATCTCAAGGAACTGGAACCCTGCTTAAATCTTATGAATCCAGTCGCCCTTTCTTTGGGCTGTTCTCTGATGATGTTGACCA ACCCAGTAAGCTTACTTCAGATGAAAAAAGCATGTTCAACTGGCATTCAGCTCCCATGATGTACACAGGCCACCCATTTAACATGTTGGCATCTAGCATG GAAGTTCAGGTGGCAAAAGATAAAGATACACAACAACAGCATGGAAGCCGGTTCTTGCCTTTTCCATATGCGGACAGTTCTCCTCATCCATCGAGATCTA AACCACAGCATCTTCCTTTTCAACAATGTAATGAGAGAACAGCTAAAGATGATAATTACAAACTTTTTGGTGTCTCCCTTTTTAGGAATTCTAAGGCACT GGAACCAGCCACTATTCACAGGCACTCCGCGGATAAACCACAACATCAAATCAATGTTGCATCAGATCATCTACAATTGTTGGGTTCTGATAGATATTTG GAGCAATTAAAGCATCCAAAGCATGCTAGATGTGAGGAACAAGAGAACATTTTTCAAGCCTCTTCTTTATATTCAAAAGATGTCCAGGGCAAGCCTGAGG GTGGTTCAGCAAGAAGATGTGTAAAGGTTCACAAGCAGGGGACTGCTGTAGGGAGGTCTCTGGACCTGGCAAAGTTTAACGGCTACAATGAATTGACAGC AGAACTGGATCAGATTTTTGAATTCAATGGTGAATTAGTTGCTCCTAACAAAGATTGGCTGATTGTTTTTACTGATGATGAGGATGATATGATGCTTGTA GGAGATGATCCCTGGCAGGAATTCTGTAGCATGGCCCGCAGGATCTTTATCTATACTAAAGAGGAGATAAACAGGATGGAGCCACGTTCCCTGAATCGTG AAGCCGAGGGAAATTCACGAAGTACAGACCAAATGGTTGATTTGGAAAATCGAATTTCGAAGCATCTTCCAGCTGTGAGTCCCTCGGAGTGTCAAGGCTT GTGCTACATGACTGGCAGCAAGGTAATGAGGCCGGAAAGGTGA
AA sequence Show only first row Show all	>Potri.003G163600.5 pacid=42785491 polypeptide=Potri.003G163600.5.p locus=Potri.003G163600 ID=Potri.003G163600.5.v4.1 annot-version=v4.1 MINGSNSVDINRNGIASRSWSFPVACEGSEDALYKELWHACAGPLVTVPRQGELVYYFPQGHIEQVEASTNQVADDQQMPAYNLSPKILCRVVNVQLKAE LDTDEVFAQVILLPETQQDVELVEEEDLPPLPARPRVHSFCKMLTASDTSTHGGFSVLKRHADECLPPLDMSLQPPVQELVAKDLHGNEWRFRHIFRGQP RRHLLQSGWSLFVSAKKLVAGDAFIFLRGETEELRVGVRRALRQPSKIPSSLISSHSMHIGILATAWHAVSTGSMFTVYYKPRTSPAEFIIPVDKYMESV KINYAIGMRFKMRFEADDAPEQRFSGTVIGVEEADPKKWPRSNWRCLKVHWDETSPVHRPDRVSPWKVEPALAPSMDPVSGCRLKRHRPNTVTSSADSSA LTKKDNGPSRHMQHQEILTLRNTPTGKNYSDNNHNPPWVLSQGTGTLLKSYESSRPFFGLFSDDVDQPSKLTSDEKSMFNWHSAPMMYTGHPFNMLASSM EVQVAKDKDTQQQHGSRFLPFPYADSSPHPSRSKPQHLPFQQCNERTAKDDNYKLFGVSLFRNSKALEPATIHRHSADKPQHQINVASDHLQLLGSDRYL EQLKHPKHARCEEQENIFQASSLYSKDVQGKPEGGSARRCVKVHKQGTAVGRSLDLAKFNGYNELTAELDQIFEFNGELVAPNKDWLIVFTDDEDDMMLV GDDPWQEFCSMARRIFIYTKEEINRMEPRSLNREAEGNSRSTDQMVDLENRISKHLPAVSPSECQGLCYMTGSKVMRPER

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.003G163600 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Potri.016G084900 [exp]	5.56	0.7600
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	7.00	0.8056
AT1G29820			Magnesium transporter CorA-lik...		Potri.001G353000 [exp]	9.64	0.7999
AT5G38470		RAD23D	RADIATION SENSITIVE23D, Rad23 ...		Potri.008G119700 [exp]	9.79	0.7595
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	11.48	0.7992
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	16.06	0.7865
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.011G095200 [exp]	18.65	0.7619	Pt-UBP15.2
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.002G068600 [exp]	22.84	0.7658	GT2.3
AT1G17110		UBP15	ubiquitin-specific protease 15...		Potri.001G378900 [exp]	29.54	0.7796
AT1G11330			S-locus lectin protein kinase ...		Potri.004G027666 [exp]	32.15	0.7772

Compare expression of checked genes

Potri.003G163600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.