Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28100 363 / 3e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066000 [exp] 477 / 9e-172 AT1G28100 362 / 1e-126 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002573 [exp] 340 / 2e-117 AT1G28100 311 / 5e-106 unknown protein Lus10001800 [exp] 254 / 9e-84 AT1G28100 222 / 4e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G163800.6 pacid=42785290 polypeptide=Potri.003G163800.6.p locus=Potri.003G163800 ID=Potri.003G163800.6.v4.1 annot-version=v4.1 ATGGAAGTTGCAGAAACAAAATGTTCCTCAGGCTATGGCAAGCCTCCTTGGATATTTAAAGGCAGTGCCTTATACCAGCTTCATCTTGTTAAATCCGAAA CTGCTCGAGCATTCATTCCGAAAGAGTTCAGATTAGTTGAAGCATTTGGATACACTCTTGGAGGTTTTTTTCTTGCTAGCTATGAAGACAGTCCAGCTGG GGTTTTTGATGAGCTTGTGGTGATTGCAGGAACAGTGTGGAACCCCCCAACATCTTGTGCATGGGCAGCCAGGGTGCTTGTAAACAGTGGTGATGCTTGT GATCATGGACGAAAGGAGGTAGGGCTTCCCAGTCAAGTTGCCAAATTTTCCAAGAAAATCACAGCAATTCCAAGGCAAAGAAAGAGCAAATTTACTGGCT TTCTTGACAAGATTGGTTTGGGCACGGCAAGTTCTAGTACAAAGAGCTGCATGGATGTTCTAGTAACTGAAACTAATGATCGTTCCACAACTGATATCTG CAACATCAACCTTACGGCTGTTGTTCCAGGGATGAAATTCGACAAATGGAAGGGGCCAGCAATAAAAATGTCGCTACCAAGTTTCAGTGGACGTACAGAG TATAACCCAAGCCTTTTGAAATATTCTTGCAATATTGAATGCAGAGTACGAGCAGTGCGGGCAGCAAAAGTATCAAGGCCATCTCTAACATCAAAGCAAG ACGCTGAAGAGTCATTGAGTGAGCATGAGAGGCAGAACTTGACCATATCTGTGATGTTGTCAAAACCAATACTAGCTTTAGAGTTCAGTTGCTTAAAAAT GCAGGTTGAAGCCCCAGTTGTAGTTTCCCAGCATTCTACAAGCAGGTTTGCAACTACAGTCACGGATTAA
AA sequence Show only first row Show all	>Potri.003G163800.6 pacid=42785290 polypeptide=Potri.003G163800.6.p locus=Potri.003G163800 ID=Potri.003G163800.6.v4.1 annot-version=v4.1 MEVAETKCSSGYGKPPWIFKGSALYQLHLVKSETARAFIPKEFRLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGTVWNPPTSCAWAARVLVNSGDAC DHGRKEVGLPSQVAKFSKKITAIPRQRKSKFTGFLDKIGLGTASSSTKSCMDVLVTETNDRSTTDICNINLTAVVPGMKFDKWKGPAIKMSLPSFSGRTE YNPSLLKYSCNIECRVRAVRAAKVSRPSLTSKQDAEESLSEHERQNLTISVMLSKPILALEFSCLKMQVEAPVVVSQHSTSRFATTVTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28100			unknown protein		Potri.003G163800 [exp]	0	1
AT5G66450			Phosphatidic acid phosphatase ...		Potri.007G021600 [exp]	1.41	0.8990
AT3G19850			Phototropic-responsive NPH3 fa...		Potri.010G170900 [exp]	1.41	0.8785
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	2.23	0.8540
					Potri.017G119700 [exp]	3.46	0.8611
					Potri.008G023250 [exp]	4.58	0.8423
AT1G54310			S-adenosyl-L-methionine-depend...		Potri.010G173800 [exp]	5.47	0.8522
AT1G05385		Psb27-H1, LPA19	LOW PSII ACCUMULATION 19, phot...		Potri.008G152800 [exp]	5.65	0.8404
AT2G25100			Polynucleotidyl transferase, r...		Potri.008G019800 [exp]	8.12	0.8206
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	9.48	0.8110
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	10.00	0.8284

Compare expression of checked genes

Potri.003G163800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.