Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33540 905 / 0 CPL3, ATCPL3 C-terminal domain phosphatase-like 3 (.1) AT5G58003 237 / 3e-68 CPL4 C-terminal domain phosphatase-like 4 (.1) AT2G04930 111 / 8e-27 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G54210 108 / 2e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 108 / 2e-25 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19600 107 / 4e-25 AtCPL5 C-terminal domain phosphatase-like 5, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G19595 104 / 4e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43610 103 / 4e-24 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G20320 103 / 1e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G43600 100 / 2e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G065600 [exp] 1870 / 0 AT2G33540 919 / 0.0 C-terminal domain phosphatase-like 3 (.1) Potri.018G108300 [exp] 234 / 5e-67 AT5G58003 499 / 3e-175 C-terminal domain phosphatase-like 4 (.1) Potri.003G173700 [exp] 49 / 2e-05 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.011G078300 [exp] 48 / 4e-05 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G353700 [exp] 46 / 0.0002 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.001G054700 [exp] 44 / 0.0006 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036271 [exp] 1113 / 0 AT2G33540 874 / 0.0 C-terminal domain phosphatase-like 3 (.1) Lus10036689 [exp] 219 / 2e-61 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10037233 [exp] 219 / 2e-61 AT5G58003 479 / 2e-167 C-terminal domain phosphatase-like 4 (.1) Lus10036277 [exp] 219 / 2e-61 AT5G58003 474 / 4e-165 C-terminal domain phosphatase-like 4 (.1) Lus10021854 [exp] 74 / 4e-14 AT5G58003 184 / 5e-56 C-terminal domain phosphatase-like 4 (.1) Lus10015787 [exp] 50 / 1e-05 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF03031 [poplar] [flax] NIF NLI interacting factor-like phosphatase CL0459 [poplar] [flax] BRCT-like PF12738 [poplar] [flax] PTCB-BRCT twin BRCT domain
Representative CDS sequence Show only first row Show all	>Potri.003G164300.6 pacid=42786400 polypeptide=Potri.003G164300.6.p locus=Potri.003G164300 ID=Potri.003G164300.6.v4.1 annot-version=v4.1 ATGGGTAAAAATGAGACCGCCTCCGCCGCCGCCAACGGCAGTGGTAAAATGGAAGACGTGGAAGAAGGGGAAATATCGGATACAGCATCAGTGGAAGAGA TCAGTGAAGATGATTTTAATAAGCAAGAAGTTGTTGTAGTGAAAGAAACACCATCATCCACTACCAACAACAACAGCAGCAGCAAACAGAAAGTTTGGAC GGTGAGAGATCTATACAAGTATCAAGTTGGAGGTGGATACATGTCTGGCTTGTATAATCTTGCTTGGGCACAAGCTGTTCAAAATAAGCCATTAAATGAG CTGTTTGTTGAGGTGGAAGTTGATGATAGTTCCCAGAAATCATCGGTGTCTTCTGTGAATAGCAGTAAAGAAGATAAGAGAACTGTTGTGATCGATGATA GTGGTGATGAGATGGACGTGGTTAAAGTTATTGATATCGAGAAAGAGGAAGGGGAGTTAGAGGAAGGGGAGATTGATTTGGATTCGGAGGGGAAGAGTGA GGGAGGAATGGTGAGTGTTGATACTGAGAAGAGGGTGAAGTCCATTCGTGAAGATTTGGAGAGTGTTAGTGTGATTAAAGATGACAAGTCATTTGAGGCA GTTTGTTTGAAACTGCATAACGCATTGGAGAGCTTGAAGGAATTGGTTAGGGTAAATGAAAATGGTTTTCCCTCAAAAGATAGTCTTGTTCGGTTGCTGT TCACTGCAATTGGAGCTGTTAATTCGTTTTTTAGCTCGATGAACCAAAAATTAAAGGAGCAGAATAAGGGCGTGTTCATGAGGTTTCTGTCCCTTGTAAA TAGCCATGATCCTTCATTTTTCTCTCCTGAGCATACCAAAGAGATTGAGCTCATGGTTTCCTCACTGGATTCTCATGATATTTTGTCAAGTTCAAGAGCT GGTGAAGAGAGAGAAACACAGGTTTCTGGTAAAGTGAATGAGAGGGATAATGATTCCTTATCGAAAACTGCAGGTTACGATTTGACTACTATGAATAGAT TACCTTCTGCTGCTGAATCTTTTGTTCATAATAAGCCCAACTTTTCAATAGAACCTCCTAAACCAGGTGTACCTAGTTTTAAGAGTAGAGGAGTTTTGCT TCCTTTGCTCGACCTCAAAAAATTTCATGATGAAGACAGTCTTCCTTCACCAACACGGGAAACAGCACCTTCTTTTCCTGTTCAAAGATTATTGCCTATT GGGGATGGAATGATTAGTTCTGGGTTGCCAGTGCCTAAGGTGGCCTCTATCACAGAAGAGCCTAGAGTGCATCCCTATGAAACTGATGCACTCAAAGCTG TTTCCAGCTATCAAAAAAAATTCAATCTTAATTCTTTTTTCACAAATGAACTTCCAAGCCCAACACCTTCGGAAGAATCTGGCAATGGGGATGGTGATAC TGCTGGGGAAGTTTCTAGTTCATCAACTGTTAACTACAGAACTGTAAATCCACCTGTTTCAGATAGAAAAAGTGCTTCTCCTTCTCCTTCTCCACCACCA CCACCTCCTCCTCCTCCTCCTCCTCCTCCCCACCTCAACAATTCGAGCATTCGTGTTGTTATCCCCACTAGGAATTCTGCACCAGTGAGTTCTGGGACTA GTTCAACCGTGAAAGCATCAGCAAAGAGCAGGGACCCTAGGCTTCGATATGTTAATACTGATGCCAGTGCTTTGGACCAGAACCAGCGCACCTTGCTGAT GGTGAATAACCCACCTAGAGCGGAACCTTCTGGAGCAATAGCAGGTTCAAGGAAGCAGAAGATAGAGGAGGATGTTTTGGATGGTACTTCGTTGAAAAGG CAAAGAAATTCATTTGATAATTTTGGTGTTGTTAGGGATATTAGAAGTATGACTGGAACTGGTGGCTGGTTAGAGGACACTGATATGGCTGAACCTCAAA CTGTGAACAAAAATCAGTGGGCAGAGAATGCAGAACCCGGTCAAAGAATAAATAATGGAGTTGTTTGTCCTAGTACTGGTAGTGTTATGTCCAGTGTGAG TTGTAGTGGCAATGTGCAGGTGCCAGTTATGGGAATTAACACCATTGCTGGAAGTGAACAGGCACCAGTGACAAGCACTACTACAGCATCCCTACCCGAT TTATTGAAGGACATCACTGTGAATCCGACAATGTTGATAAATATACTTAAGATGGGACAACAACAGAGATTAGCATTAGATGGGCAGCAGAAACTTGCTG ATCCTGCAAAAAGTACATCACATCCTCCAAGTTCAAACACGGTACTTGGAGCAATTCCTGAGGTGAATGCTGTTTCCTCACTGCCCTCAGGGATTTTGCC AAGATCTGCAGGAAAGGCCCAGGGTCCTTCTCAAATAGCTACAACGGATGAGTCAGGAAAAATTCGAATGAAACCACGAGATCCTCGTCGTGTTCTCCAT AATAATGCACTCCAGAGGGCTGGGAGCTTGGGATCCGAACAATTCAAAACAACAACCCTTACATCCACCACCCAAGGGACTAAAGATAATCAAAACTTGC AAAAACAAGAGGGGCTAGCAGAATTGAAGCCAGTTGTGCCACCTGATATTTCCTCGCCATTTACAAAGAGCTTGAAAAATATAGCTGATATTGTATCTGT TTCTCAAACATGTACAACTCCACCTTTTGTTTCTCAGAATGTTGCATCCCAACCTGTTCAAATTAAGTCAGACAGAGTGGATGGCAAAACTGGAATTTCA AATTCTGACCAGAAAATGGGACCTGCTTCATCTCCTGAAGTGGTTGCAGCAAGTTCTCTTTCACAGAACACTTGGGAAGATGTTGAGCATCTTTTTGAAG GGTATGATGACCAGCAAAAAGCTGCTATACAGAGAGAGAGAGCAAGAAGGATAGAAGAACAGAAGAAACTATTTGCTGCACGCAAGCTCTGCCTTGTTTT GGATCTGGATCATACACTTCTCAATTCAGCCAAGTTTGTCGAAGTAGACCCTGTGCATGATGAGATTTTGAGGAAAAAAGAAGAACAAGATCGTGAAAAG CCATACAGACATCTCTTTCGCTTTCCTCATATGGGGATGTGGACGAAATTGCGTCCTGGGATCTGGAATTTCTTAGAAAAGGCTAGTAAACTGTATGAGC TACATCTTTACACAATGGGAAACAAGTTATATGCTACAGAGATGGCTAAAGTGCTTGATCCAAAAGGGGTTTTGTTTGCTGGACGAGTTGTCTCCAGGGG TGATGATGGAGATCTGTTAGATGGTGATGAAAGGGTTCCCAAGAGCAAGGATCTTGAAGGGGTGTTGGGTATGGAGTCGGGTGTCGTTATCATAGATGAT TCGTTGAGAGTGTGGCCCCATAACAAATTGAACTTGATAGTTGTAGAAAGGTATATTTATTTCCCTTGCAGTAGACGGCAGTTTGGGCTTCCTGGTCCTT CTCTTTTGGAGATTGACCATGACGAGAGACCAGAAGATGGAACTTTGGCATGCTCTTTAGCGGTTATTGAGAGAATACATCAAAACTTTTTCACCCATCA TTCATTAGATGAAGCAGATGTAAGAAATATCCTTGCCTCAGAGCAGAGAAAAATTTTGGCTGGCTGTCGTATAGTTTTTAGTAGGGTGTTTCCAGTTGGT GAAGTCAACCCCCACCTTCATCCACTGTGGCAGTCAGCTGAACAGTTTGGTGCTGTCTGCACGAACCAGATAGATGAACAGGTTACTCATGTAGTTGCCA ATTCCCTTGGGACTGATAAGGTGAATTGGGCTCTTTCCACGGGAAGATTCGTTGTCCATCCTGGCTGGGTGGAAGCATCAGCTTTGCTTTATCGAAGAGC AAATGAGCAAGATTTTGCCATTAAACCATAA
AA sequence Show only first row Show all	>Potri.003G164300.6 pacid=42786400 polypeptide=Potri.003G164300.6.p locus=Potri.003G164300 ID=Potri.003G164300.6.v4.1 annot-version=v4.1 MGKNETASAAANGSGKMEDVEEGEISDTASVEEISEDDFNKQEVVVVKETPSSTTNNNSSSKQKVWTVRDLYKYQVGGGYMSGLYNLAWAQAVQNKPLNE LFVEVEVDDSSQKSSVSSVNSSKEDKRTVVIDDSGDEMDVVKVIDIEKEEGELEEGEIDLDSEGKSEGGMVSVDTEKRVKSIREDLESVSVIKDDKSFEA VCLKLHNALESLKELVRVNENGFPSKDSLVRLLFTAIGAVNSFFSSMNQKLKEQNKGVFMRFLSLVNSHDPSFFSPEHTKEIELMVSSLDSHDILSSSRA GEERETQVSGKVNERDNDSLSKTAGYDLTTMNRLPSAAESFVHNKPNFSIEPPKPGVPSFKSRGVLLPLLDLKKFHDEDSLPSPTRETAPSFPVQRLLPI GDGMISSGLPVPKVASITEEPRVHPYETDALKAVSSYQKKFNLNSFFTNELPSPTPSEESGNGDGDTAGEVSSSSTVNYRTVNPPVSDRKSASPSPSPPP PPPPPPPPPPHLNNSSIRVVIPTRNSAPVSSGTSSTVKASAKSRDPRLRYVNTDASALDQNQRTLLMVNNPPRAEPSGAIAGSRKQKIEEDVLDGTSLKR QRNSFDNFGVVRDIRSMTGTGGWLEDTDMAEPQTVNKNQWAENAEPGQRINNGVVCPSTGSVMSSVSCSGNVQVPVMGINTIAGSEQAPVTSTTTASLPD LLKDITVNPTMLINILKMGQQQRLALDGQQKLADPAKSTSHPPSSNTVLGAIPEVNAVSSLPSGILPRSAGKAQGPSQIATTDESGKIRMKPRDPRRVLH NNALQRAGSLGSEQFKTTTLTSTTQGTKDNQNLQKQEGLAELKPVVPPDISSPFTKSLKNIADIVSVSQTCTTPPFVSQNVASQPVQIKSDRVDGKTGIS NSDQKMGPASSPEVVAASSLSQNTWEDVEHLFEGYDDQQKAAIQRERARRIEEQKKLFAARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREK PYRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVVSRGDDGDLLDGDERVPKSKDLEGVLGMESGVVIIDD SLRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLACSLAVIERIHQNFFTHHSLDEADVRNILASEQRKILAGCRIVFSRVFPVG EVNPHLHPLWQSAEQFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	2.23	0.8640
AT5G11700			unknown protein		Potri.006G234500 [exp]	4.00	0.8428
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	7.74	0.8321
AT2G25320			TRAF-like family protein (.1)		Potri.006G256400 [exp]	8.36	0.8171
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	10.58	0.8307
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	12.64	0.8246
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	12.84	0.8169	Pt-TOP1.2
AT2G29210			splicing factor PWI domain-con...		Potri.009G036900 [exp]	14.24	0.7949
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	15.58	0.8284	PAFC901
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.010G213300 [exp]	15.87	0.8076

Compare expression of checked genes

Potri.003G164300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.