Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23690 568 / 0 Polynucleotide adenylyltransferase family protein (.1) AT1G28090 568 / 0 Polynucleotide adenylyltransferase family protein (.1.2.3) AT3G48830 540 / 0 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (.1) AT2G17580 335 / 3e-106 Polynucleotide adenylyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105000 [exp] 626 / 0 AT5G23690 663 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.015G104300 [exp] 600 / 0 AT5G23690 637 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Potri.005G100100 [exp] 345 / 2e-109 AT2G17580 459 / 4e-150 Polynucleotide adenylyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036013 [exp] 597 / 0 AT5G23690 649 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10016719 [exp] 582 / 0 AT5G23690 635 / 0.0 Polynucleotide adenylyltransferase family protein (.1) Lus10016699 [exp] 335 / 1e-106 AT2G17580 453 / 1e-149 Polynucleotide adenylyltransferase family protein (.1) Lus10035995 [exp] 46 / 4e-05 AT2G17580 75 / 6e-15 Polynucleotide adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [poplar] [flax] NTP_transf PF01743 [poplar] [flax] PolyA_pol Poly A polymerase head domain CL0260 [poplar] [flax] PF12627 [poplar] [flax] PolyA_pol_RNAbd Probable RNA and SrmB- binding site of polymerase A
Representative CDS sequence Show only first row Show all	>Potri.003G164400.3 pacid=42784822 polypeptide=Potri.003G164400.3.p locus=Potri.003G164400 ID=Potri.003G164400.3.v4.1 annot-version=v4.1 ATGACAGTTGTAGTTGCATGGACGACCCATTTATGCTTTCACCATCCTCTCTTATACCATATTCGGCATTGCAGCAACTCTGTTGTAGCAGTTGCATCAA CCACTGAACATAAAGAAGAGGGTCATCTTCCAGTAATTAATTCTGCCTCCAAAAAAGAAAAGGTAAATGGTGAAAGAAAGGCACCTGAATGGAAGAAGCT GGACGCTGAAGAACTTGGAATCAGTAATTCAATTATATCAAGACCTACAAGAGTCGTGCTTAATGGGCTCAAGAAGAAAGGATATGAGGTCTACCTTGTT GGAGGTTGTGTAAGGGATCTTATCTTAAAGAGAATCCCAAAAGACTTTGATGTTATAACTTCAGCTGAACTTAAGCAGGTAAGAAAAGCCTTTCATCGAT GTGAAATTGTTGGGAAACGGTTTCCTATATGCCACGTGCATGTGGATGATGCCATTGTGGAGGTTTCAAGTTTTAGCACTTCTCAATTGAAGTCTGATGG GAAATTCAATGGTAATGTCAGAAAACCTCGAGGTTGCAGTGAGCGCGATTTTATTCGATGGAGGAACTGCTTGCAGCGGGACTTTACAATCAACGGGTTG ATGCTTGATCCATATGCGAACATAGTGTATGACTATATGGGAGGAATTACAGACATTAAGAAAACCAAAGTCCGTACAGTAATACCTGCAAATCTTTCTT TCGTGGAGGATAGTGGTCGCATTTTACGTGCAATCAGAATTGCTGCCCGTTTACATTTTGGTTTTACTAGAGATCTTGCTCTTTCTCTAAAAGAGCTTTC TCATTCTGTGCTTAGGCTGGACAAGGGTAGGATACTCTTGGAACTGAATTATATGTTCGCATATGGATCTGCAGAAGCTTCTTTGAGATTAATGTGGAGA TTTGGACTTCTAGAGATCCTTCTACCCATCCAAGCGTCTTATTTTGTTTCCCAAGGCTTTCGAAGACGGGATGAGAGATCAAATATGCTTCTGTCTTTGT TTTCCAATCTTGATAGACTAGTAGCACCTGATCGGCCATGCCACTCTAGCTTATGGTTAGGCATTTTCGCTTTCCATAAGGCTCTGGTTGATCAGCCTCA AGATCCATTGGTAGTTACTGCATTTAGCCTTGCTGTCCACAGTGGTGGATCTTTACTGGAATCCGTGGAAATTGCAAGGAGGATATCCCAGCCATATCAA TCCAGTTTCCCCGAATTATTGGAAGCACAGAATCCAGATTCAAATAATGCATTGGTGCATAAAACCATCAATTTTGCTGCATTGGTCAAAACTGCGTTAT GCAATATGACTGATGGATGTTATGTCTCTAAAGCAATGGCTAAATACCCCAAAGCACCGTCCTCAGATTTGGTTTTTATCCCCATGGCCTTGTTTCTAAG AGTGAGCAAGATTTTTGAATGCGTTAGAAGAAGGGGCATGGAGACAAGATTTGTGCGCCGACAGGGGAGGAAGATTGACTATGAGTCTTTGGCAATGGGT AGCTTGGAGGAGGTTAGACATGTATTTGCAAGGATAGTTTTCGACACTGTTTACCCTCCAAACCAAAGCAATGAGAACAATGTTGCTAATCAAAGACCTT GA
AA sequence Show only first row Show all	>Potri.003G164400.3 pacid=42784822 polypeptide=Potri.003G164400.3.p locus=Potri.003G164400 ID=Potri.003G164400.3.v4.1 annot-version=v4.1 MTVVVAWTTHLCFHHPLLYHIRHCSNSVVAVASTTEHKEEGHLPVINSASKKEKVNGERKAPEWKKLDAEELGISNSIISRPTRVVLNGLKKKGYEVYLV GGCVRDLILKRIPKDFDVITSAELKQVRKAFHRCEIVGKRFPICHVHVDDAIVEVSSFSTSQLKSDGKFNGNVRKPRGCSERDFIRWRNCLQRDFTINGL MLDPYANIVYDYMGGITDIKKTKVRTVIPANLSFVEDSGRILRAIRIAARLHFGFTRDLALSLKELSHSVLRLDKGRILLELNYMFAYGSAEASLRLMWR FGLLEILLPIQASYFVSQGFRRRDERSNMLLSLFSNLDRLVAPDRPCHSSLWLGIFAFHKALVDQPQDPLVVTAFSLAVHSGGSLLESVEIARRISQPYQ SSFPELLEAQNPDSNNALVHKTINFAALVKTALCNMTDGCYVSKAMAKYPKAPSSDLVFIPMALFLRVSKIFECVRRRGMETRFVRRQGRKIDYESLAMG SLEEVRHVFARIVFDTVYPPNQSNENNVANQRP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	0	1
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	2.23	0.8115	UBP26.2
					Potri.003G039551 [exp]	3.00	0.8283
AT1G12150			Plant protein of unknown funct...		Potri.006G004100 [exp]	3.16	0.8290
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.004G099300 [exp]	4.89	0.7994
AT3G07660			Kinase-related protein of unkn...		Potri.011G079800 [exp]	8.48	0.7717
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	10.19	0.7434
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.014G100700 [exp]	11.22	0.7657
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.012G076600 [exp]	11.22	0.7481
AT5G47310			PPPDE putative thiol peptidase...		Potri.001G154400 [exp]	13.74	0.7784
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Potri.015G074900 [exp]	14.45	0.7504

Compare expression of checked genes

Potri.003G164400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.