Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13250 218 / 2e-67 RING finger protein (.1) AT1G28080 122 / 5e-32 RING finger protein (.1) AT1G06770 82 / 3e-17 DRIP1 DREB2A-interacting protein 1 (.1.2) AT2G30580 81 / 2e-16 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT3G23060 64 / 5e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G062700 [exp] 584 / 0 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.013G042000 [exp] 96 / 1e-21 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 94 / 8e-21 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.004G137200 [exp] 81 / 5e-17 AT5G13250 92 / 9e-21 RING finger protein (.1) Potri.005G219000 [exp] 81 / 1e-16 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 77 / 3e-15 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 72 / 1e-13 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 69 / 1e-12 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002575 [exp] 91 / 4e-20 AT5G13250 90 / 9e-20 RING finger protein (.1) Lus10021993 [exp] 76 / 5e-15 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 76 / 6e-15 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10001802 [exp] 69 / 1e-12 AT5G13250 66 / 9e-12 RING finger protein (.1) Lus10033860 [exp] 68 / 3e-12 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 66 / 1e-11 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10003261 [exp] 0 / 1 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF16207 [poplar] [flax] RAWUL RAWUL domain RING finger- and WD40-associated ubiquitin-like
Representative CDS sequence Show only first row Show all	>Potri.003G164800.3 pacid=42787232 polypeptide=Potri.003G164800.3.p locus=Potri.003G164800 ID=Potri.003G164800.3.v4.1 annot-version=v4.1 ATGACCATGGTTCCTGCTCAAAGTCTTTCTAAACAGCAACAGCATCAACTTTGTGATGGTGGTTATTTTGGTGAGGATGTCCATACTTTTAAAGAGGGCT TTGGTCTTATGAGCCGATTAGAAGGTTATGAGTACTCTTGTGTTAGCGAAGCTTGCTTATTAGGATCTGATCTAGTGGTGGCTAATATTCCCATGGCTGA AGATGAATCAAGAACTAACAGTCTTAATAATGAAGCTGGCTCAAGCTCAAAAGATGTTCAAGAAGAGAGACATGAAGGGTGGCTCCAATTGAGTATAGGT GGTCACACAACAACAGCAACACCAACAAGCCATGAGGGCAAGCACGATCATCATCATCATCAACAACAACAACAACAACAACAGCTAGTACTTGATTCTA CAAGTAGAAGAGGAGGGTTGATAGAGCTTGATCTACTACGAGGTAGCAGTAGTAGAATTTCACATCAAGCGAGGCCATTGAGTAGTCCTGTTTTTCACGT TCCTGATTTTAGAGCTCCTCCAAGGCCAGTCCCAAGTCATGCCACTAATTTTAGCAATACATCTTTATTCTTTCAACACCATCCAGCAGCAACTAGCTCA ACCTATCCTCTTCATCAAGAGATAAACTGGCCTTTTAGGCCTATGTTGCACAATATAGCGACCGCCTCATCTTCTCCACCATCCTCTTCTTCGTCTTTGA TGCCATTGGGGTCCTATTTTTCTCGTCCGTTCCAAGTAAATAGTACTGGCATGGATTTTGCAGGACCGAGCTCCGACTTTAAAGTAATCGATCCTCCAAG AAGATCCCATTCTGGCATTTGGTTTATGCTACAAGCGTCTCAAAATCAAACGAAAGAACCCTTCTTGCCGCAAATATCCAAGAGCTACCTGAGAATCAAG GATGGAAGGATGACAGTTCGGCTATTAATGAAGTATCTGGTTAACAAGCTGAGACTGGATAGCGAATCAGAGCAGATAGAGATGACCTGTAGAGGGCAAC AGCTTCTTCCTTTCTTGACACTGCAGCATGTTAGGGATAACATCTGGAGCCCCAGAGAGGAACTCACTTTGCTTCCAGAATCCTCAACCACGGATCATGT CATGGTGCTGCACTATGGTAGAAGTGCTTAA
AA sequence Show only first row Show all	>Potri.003G164800.3 pacid=42787232 polypeptide=Potri.003G164800.3.p locus=Potri.003G164800 ID=Potri.003G164800.3.v4.1 annot-version=v4.1 MTMVPAQSLSKQQQHQLCDGGYFGEDVHTFKEGFGLMSRLEGYEYSCVSEACLLGSDLVVANIPMAEDESRTNSLNNEAGSSSKDVQEERHEGWLQLSIG GHTTTATPTSHEGKHDHHHHQQQQQQQQLVLDSTSRRGGLIELDLLRGSSSRISHQARPLSSPVFHVPDFRAPPRPVPSHATNFSNTSLFFQHHPAATSS TYPLHQEINWPFRPMLHNIATASSSPPSSSSSLMPLGSYFSRPFQVNSTGMDFAGPSSDFKVIDPPRRSHSGIWFMLQASQNQTKEPFLPQISKSYLRIK DGRMTVRLLMKYLVNKLRLDSESEQIEMTCRGQQLLPFLTLQHVRDNIWSPREELTLLPESSTTDHVMVLHYGRSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13250			RING finger protein (.1)		Potri.003G164800 [exp]	0	1
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	2.00	0.8165
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.006G200600 [exp]	3.16	0.7977	Pt-CDPK5.6,CPK26
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	5.29	0.8228
AT1G80650		RTL1	RNAse THREE-like protein 1 (.1...		Potri.003G179700 [exp]	7.00	0.7369
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	8.24	0.8322
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.006G108300 [exp]	9.00	0.7999
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Potri.015G141400 [exp]	10.39	0.7490
AT1G09600			Protein kinase superfamily pro...		Potri.004G226900 [exp]	10.95	0.7753
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G066100 [exp]	11.48	0.7895
AT5G42710			unknown protein		Potri.002G261700 [exp]	12.00	0.8201

Compare expression of checked genes

Potri.003G164800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.