Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13230 950 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 598 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 587 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 561 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 560 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 541 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 535 / 0 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 540 / 2e-180 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 537 / 9e-179 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 533 / 6e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 619 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 589 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 587 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 577 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 577 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 569 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 561 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 551 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 548 / 0 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038839 [exp] 893 / 0 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014956 [exp] 601 / 0 AT5G13230 484 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 584 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 583 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 580 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 580 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 563 / 0 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 562 / 0 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 550 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 546 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.003G164900.1 pacid=42786675 polypeptide=Potri.003G164900.1.p locus=Potri.003G164900 ID=Potri.003G164900.1.v4.1 annot-version=v4.1 ATGATCAGATTGCTTCGCTCTAAATTACTACAACATCCTAATCACTGTAAATCCAACACCGCATTATGCATCATCACTCAACGTTCGTTCTTAGCCCAAC GCACTTCTCATTCTTCACCAGAATTCAACACTTACATTTATGGTTCTTTACTCCAAAGTTGTATCCGAAACGGTGACTGCGCCACCGGAAAATATCTCCA TTGTGAGATTATAAAGAAGGGTAATTGCCTAGACTTGTTTGCTAACAACATTCTTTTAAATTTTTATGTAAAATACGACTCATTACCTGATGCAGCTAAG CTGTTCGATGAAATGCCTGACAGAAATACGGTGTCTTTTGTTACTTTGATTCAAGGTTATAGTCAGTGTCTTAGATTTTCTGAAGCTATTGGGTTGTTTT CTAGGTTACAAGGAGAGGGTCATGAGCTTAACCCTTTTGTTTTTAGTACTGTTTTGAAGCTGCTTGTCAGTGCTGAGTGGGCTAAATTGGGGTTTAGTGT CCATGCTTGTGTTTACAAGCTTGGTTTTGATTCTGACGCCTTTGTGGGTACTGCTTTGATTGATTGCTACTCTGTTTGTGGGTACGCTGAGTGTGCAAGA CAAGTTTTTGACGCGATTGAATACAAGGATATGGTTTCTTGGACTGGGATGGTTGCTTGTTATGTAGAGAATGAGTGTTTTGAAGAGTCTTTGAAGCTTT TTTCACGGATGAGGATAGTTGGGTTTAAGCCGAATAATTTTACCTTTGCGAGTGTGTTGAAGGCTTGTGTTGGGCTGGAGGTGTTTAATGTGGGAAAGGC TGTGCATGGATGTGCTTTCAAAACATCTTATTTGGAAGAACTTTTTGTTGGTGTTGAATTGATTGACTTGTACATCAAATCCGGGGATGTTGATGATGCT TTACAGGTGTTTGAAGAGATGCCTAAAGATGATGTGATTCCTTGGAGTTTTATGATTGCTCGGTATGCTCAGAGTGAGCAGAGTGAAGAGGCTATTGAGA TGTTTTGTAGGATGAGGCGAGGTTTGGTGCTTCCTAATCAGTTTACGCTGGCTAGTTTACTGCAAGCATGTGCGAGCTTGGTGGATTTGCAATTGGGGAA TCAAATCCATTGCCATGTAGTTAAGGTTGGTTTAGATATGAATGTTTTTGTATCAAATGCTCTAATGGATATGTATGCTAAATGTGGAAGGATGGAGAAC TCATTGCAACTATTTTCAGAATCACCAAACTGTACTGATGTGAGTTGGAATACGGTGATTGTTGGCTATGTGCAGGCAGGCAATGGGGAGAAGGCATTGA TTTTGTTTAAAGATATGCTTGAATGCCAAGTTCAGGGAACGGAAGTGACATACTCTAGCGTGCTTCGTGCATGTGCTGGTATTGCTGCCTTGGAACCAGG CAGTCAGATTCATTCCTTGTCAGTGAAAACTATTTATGACAAGAACACCGTGGTTGGCAATGCTTTGATAGATATGTATGCCAAATGTGGAAACATTAAA GATGCACGTTTAGTATTTGACATGCTAAGGGAACATGATCAAGTGTCATGGAACGCTATGATTTCAGGATATTCTGTGCATGGACTATATGGGGAAGCTC TAAAAACTTTTGAATCGATGCTGGAAACAGAGTGTAAACCAGACAAGGTGACTTTTGTTGGTATCCTGTCAGCGTGTAGCAATGCCGGACTCTTAGATAG AGGACAAGCTTATTTTAAATCTATGGTAGAAGAATATGACATTGAACCATGTGCAGAGCACTACACTTGTATGGTCTGGCTTTTAGGGAGATCGGGTCAT CTTGATAAGGCAGCTAAGTTGGTTCATGAAATTCCATTTGAGCCTAGTGTTATGGTGTGGCGGGCCTTACTCAGTGCTTGTGTCATCCATAATGATGTTG AACTTGGAAGAATTTCTGCCCAGCGTGTTCTTGAGATAGAACCAGAAGACGAGGCAACACATGTATTATTGTCAAACATATACGCTAATGCAAGGAGGTG GGGAAATGTGGCCTCCATTAGGACAAGCATGAAAAGGAAAGGAATCAGGAAAGAACCAGGCCTAAGTTGGATTGAGAACCAGGGTAGGGTTCATTATTTT TCCGTGGGGGACACTTCACATCCCGACACAAAATTGATTAACGGGATGCTGGAGTGGTTGAACATGAAAGCCAGGAATGAAGGTTATGTTCCTGATTTTA GTTCTGTTTTGCTTGATGTGGAGGATGTTGACAAGGAACAGCGACTGTGGGTCCACAGTGAAAGACTAGCTTTAGCCTATGGTCTAATTAGAACACCATC CATAAGCCCTCTTCGAATTATAAAGAATCTCCGAATATGTGCAGACTGTCATGCTGCAATAAAATTAATATCAAAGATTGTGCAGCGTGATATCATTATC AGAGATATGAATCGTTTCCATCACTTTCATGAGGGAATTTGCTCTTGTGGTGATTACTGGTGA
AA sequence Show only first row Show all	>Potri.003G164900.1 pacid=42786675 polypeptide=Potri.003G164900.1.p locus=Potri.003G164900 ID=Potri.003G164900.1.v4.1 annot-version=v4.1 MIRLLRSKLLQHPNHCKSNTALCIITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAK LFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECAR QVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDA LQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN SLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIK DARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGH LDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYF SVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIII RDMNRFHHFHEGICSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	0	1
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	1.00	0.8937
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	2.00	0.8609
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	4.00	0.8649
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	4.47	0.8229
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G151500 [exp]	5.74	0.8420
AT2G46050			Pentatricopeptide repeat (PPR-...		Potri.014G087100 [exp]	6.70	0.8311
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.001G273100 [exp]	7.34	0.8642
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	8.36	0.8322
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G152000 [exp]	8.48	0.8454
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	8.94	0.8462

Compare expression of checked genes

Potri.003G164900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.