Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13210 852 / 0 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43400 753 / 0 Uncharacterised conserved protein UCP015417, vWA (.1) AT3G24780 749 / 0 Uncharacterised conserved protein UCP015417, vWA (.1) AT5G43390 714 / 0 Uncharacterised conserved protein UCP015417, vWA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G091400 [exp] 282 / 2e-86 AT5G43400 339 / 3e-108 Uncharacterised conserved protein UCP015417, vWA (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041147 [exp] 726 / 0 AT5G43400 823 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10021875 [exp] 716 / 0 AT5G43390 803 / 0.0 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016990 [exp] 322 / 2e-106 AT5G43400 318 / 7e-106 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10013399 [exp] 239 / 1e-74 AT5G43400 261 / 2e-83 Uncharacterised conserved protein UCP015417, vWA (.1) Lus10016989 [exp] 99 / 2e-21 AT4G26510 761 / 0.0 uridine kinase-like 4 (.1.2) Lus10021874 [exp] 44 / 9e-06 ND 56 / 4e-11
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11443 [poplar] [flax] DUF2828 Domain of unknown function (DUF2828)
Representative CDS sequence Show only first row Show all	>Potri.003G165200.1 pacid=42785366 polypeptide=Potri.003G165200.1.p locus=Potri.003G165200 ID=Potri.003G165200.1.v4.1 annot-version=v4.1 ATGGCACCACCATCTCTCCTTGGCCCTCCAGAGATTAAGAAGCCAGTGCCAACACCACAACAACAAGCCCCAACAACTGTACGGAATCCCTTTGTAGATC TAATGGTAGACAATTTCAATAAAACCACTGTTAATCAATTACCCCAGATGGGTTACACTGAAAATATGTCAGCTACCTTTCTCTCCTCGGGCAACCCCTG TCTTGATTTATTTTTCCATGTAGTACCAAATACCCCACCTGAATCCCTCCAGAAAAGACTCCACTCTGCCTGGAACCACAACCCCTTGACCACCCTCAAA CTCATCTGTAACCTTAGAGGTGTACGTGGCACCGGAAAATCTGATAAAGAAGGGTTTTACACATCAGCAATCTGGCTACACAACAACCACCCCAAAACTC TAGCCTGCAATATTCCATCCATGGCGGATTTCGGTTACTTTAAGGATTTGCCTGAAATTCTTTACCGACTTTTAGAAGGGCCTGATGTGAGAAAGATCCA AAAACAAGAGTGGAGGCAGAGAAAAGGCAGAAAGACTGGAAGGAGAGCGGGATTTAAGATTGGGCAACCAAAGACTCTAGCGCCATTTCAACGCAGCAAG AGGCCTAAGAATGCTAAATCGTCAAGAAATGCTGGGCCTAGCATTCCCATACATATCAGAATCCAGAATGAAAAGAGAAGGGCTGAGATGGAGAAAGAGA ATGCAAGTATTGCCAGGAAAGAGAGAAGGGCAGCCATGGCGAAGAAGGTTATTGAAAGATATAGTCATGACCCTGATTATCGGTTCTTATATGAGGGCGT ATCGGATTTCTTTGCGGGTTGCCTTAAGACTGATATGCAACACTTGAATTCTAGTAATACAACAAAGGTCAGTCTTGCTGCGAAATGGTGCCCCTCTATT GATTCTTCCTTTGATCGATCAACTCTGTTGTGTGAGAGTATTGCAAGGAAGGTATTTCCTAGAGAATCTTATCCTGAATATGAAGGAATCGAAGAGGCAC ATTATGCTTATCGTGTTCGTGATCGATTGAGGAAGGAGGTTTTGGTTCCGCTTCGTAAGGTTCTTGAGTTGCCTGAGGTCTATATCGGTGCTAATAGATG GGATTCCATCCCATACAATAGAGTTGCTTCTGTGGCCATGAAGTTTTACAAGAAAAAGTTTTTTAAACATGATGCAGAGCGTTTCAGACAGTATTTGGAA GATGTGAAAGCTGGAAAGACCAAGATTGCAGCAGGTGCATTGCTGCCTCATGAGATCATCGAGTCTTTGAACGATGACGATGGTGGAGAAGTAGCAGAGC TGCAGTGGAAGAGAATCGTTGATGATTTATTGCAGAAAGGGAAGATGAAAAACTGTATAGCTGTCTGTGATGTGTCCGGGAGCATGTCTGGGACTCCAAT GGAGGTTTCTGTGGCACTTGGTCTGTTGGTTTCAGAGCTTTGTGAAGAGCCATGGAAGGGTAAGCTAATTACATTCAGTCAAAACCCCATGCTTCAAATG GTTGAAGGAGATAGTCTTCTACAGAAGACTGAGTTTGTGAGGAGCATGGAGTGGGGCATGAACACTAATTTCCAAAAGGTGTTTGATCTTATTTTGCAAG TTGCTGTTAATGGTAATTTGAGAGAGGATCAAATGATCAAGAGGGTGTTTGTGTTTAGTGACATGGAATTTGATCAAGCTTCCTGCAATCCTTGGGAAAC AGACTATCAAGTCATTGCAAGGAAGTTTACTGAAAAGGGTTATGGTAATGTAATCCCAGAGATTGTGTTTTGGAATTTGAGAGACTCAAGGGCTACACCA GTACCTGGTACACAGAAGGGAGTTGCACTTGTGAGTGGGTTTTCTAAAAATTTGATGAAATTGTTTTTGGATGGAGATGGTGAAATAAGCCCTGAAGCTG TTATGAAAGAGGCCATCGCTGGGGAAGAGTATCAGAAGTTAGTTGTGCTTGATTGA
AA sequence Show only first row Show all	>Potri.003G165200.1 pacid=42785366 polypeptide=Potri.003G165200.1.p locus=Potri.003G165200 ID=Potri.003G165200.1.v4.1 annot-version=v4.1 MAPPSLLGPPEIKKPVPTPQQQAPTTVRNPFVDLMVDNFNKTTVNQLPQMGYTENMSATFLSSGNPCLDLFFHVVPNTPPESLQKRLHSAWNHNPLTTLK LICNLRGVRGTGKSDKEGFYTSAIWLHNNHPKTLACNIPSMADFGYFKDLPEILYRLLEGPDVRKIQKQEWRQRKGRKTGRRAGFKIGQPKTLAPFQRSK RPKNAKSSRNAGPSIPIHIRIQNEKRRAEMEKENASIARKERRAAMAKKVIERYSHDPDYRFLYEGVSDFFAGCLKTDMQHLNSSNTTKVSLAAKWCPSI DSSFDRSTLLCESIARKVFPRESYPEYEGIEEAHYAYRVRDRLRKEVLVPLRKVLELPEVYIGANRWDSIPYNRVASVAMKFYKKKFFKHDAERFRQYLE DVKAGKTKIAAGALLPHEIIESLNDDDGGEVAELQWKRIVDDLLQKGKMKNCIAVCDVSGSMSGTPMEVSVALGLLVSELCEEPWKGKLITFSQNPMLQM VEGDSLLQKTEFVRSMEWGMNTNFQKVFDLILQVAVNGNLREDQMIKRVFVFSDMEFDQASCNPWETDYQVIARKFTEKGYGNVIPEIVFWNLRDSRATP VPGTQKGVALVSGFSKNLMKLFLDGDGEISPEAVMKEAIAGEEYQKLVVLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13210			Uncharacterised conserved prot...		Potri.003G165200 [exp]	0	1
					Potri.005G062450 [exp]	2.00	0.8736
AT4G17080			Histone H3 K4-specific methylt...		Potri.014G052300 [exp]	9.38	0.7992
					Potri.011G073291 [exp]	10.81	0.8601
AT3G61680			alpha/beta-Hydrolases superfam...		Potri.014G097200 [exp]	11.13	0.7869
					Potri.001G439825 [exp]	11.18	0.8435
					Potri.009G102850 [exp]	23.04	0.8239
					Potri.012G009345 [exp]	25.88	0.8130
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.010G085500 [exp]	29.08	0.8011	PAFE901
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.002G195066 [exp]	30.51	0.8010
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Potri.016G064300 [exp]	30.51	0.7267

Compare expression of checked genes

Potri.003G165200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.