Plant FIBer expression Database

Potri.003G165550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G014550
[exp]
97 / 4e-27 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G165550.1 pacid=42787350 polypeptide=Potri.003G165550.1.p locus=Potri.003G165550 ID=Potri.003G165550.1.v4.1 annot-version=v4.1
ATGGCTGCAACGCTGGTGGTGACTTTCGCCTGCTTGATACCTTTACTTCTGCCTTCCCTTTTTGCTCCTGTGCCCACGGTCTGCTTTCGTTTTCCAGCAG
ATTTTGAGATAATGAAGGAACCGAGAACGAAGGTGCCGGCTTCTGTGGATACTGATTTTTGGGTCGTTTTCTGCAGGGATGAAAGCAATGGCAGAACCAA
TTATCCTCTCCGTGTTGTTCCTCTGCTTTTCTTTTGTTTCAATTCGTGCTCTGCCTTCCCCTGTTTTCTGGTTTTTTTCTCTGGGTTTTGCTCCAGTTCT
CTCCTCTGGTTCTGTTTTTTTCCCCCCTGGTTCTGTTTTTTTCGTCTAGGTTTAGCTTGA
AA sequence
>Potri.003G165550.1 pacid=42787350 polypeptide=Potri.003G165550.1.p locus=Potri.003G165550 ID=Potri.003G165550.1.v4.1 annot-version=v4.1
MAATLVVTFACLIPLLLPSLFAPVPTVCFRFPADFEIMKEPRTKVPASVDTDFWVVFCRDESNGRTNYPLRVVPLLFFCFNSCSAFPCFLVFFSGFCSSS
LLWFCFFPPWFCFFRLGLA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G165550
[exp]
0 1
AT3G25830 ATTPS-CIN "terpene synthase-like sequenc... Potri.011G031800
[exp]
8.06 0.9871
AT1G15385 unknown protein Potri.001G171701
[exp]
12.96 0.9824
AT2G25625 unknown protein Potri.006G248300
[exp]
15.58 0.9807
AT1G68840 AP2_ERF EDF2, RAV2, RAP... TEMPRANILLO 2, RELATED TO AP2 ... Potri.003G010700
[exp]
16.24 0.9864
AT4G15480 UGT84A1 UDP-Glycosyltransferase superf... Potri.009G095300
[exp]
18.81 0.9862
Potri.011G005400
[exp]
22.36 0.9860
AT4G01500 B3 NGA4 NGATHA4, AP2/B3-like transcrip... Potri.004G221300
[exp]
24.79 0.9859
Potri.011G005500
[exp]
27.60 0.9857
AT4G34120 CBSX2, CDCP1, L... LOSS OF THE TIMING OF ET AND J... Potri.001G303900
[exp]
29.46 0.9542
AT2G15220 Plant basic secretory protein ... Potri.009G094600
[exp]
34.33 0.9852

Potri.003G165550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.