Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28050 204 / 2e-59 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G33500 202 / 3e-59 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT5G48250 122 / 3e-30 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT3G07650 117 / 3e-28 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT2G47890 110 / 3e-27 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT1G68190 99 / 2e-22 CO B-box zinc finger family protein (.1) AT4G15250 99 / 2e-22 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G21880 99 / 3e-22 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT5G24930 82 / 1e-16 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT5G15840 81 / 2e-16 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061800 [exp] 727 / 0 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 162 / 7e-44 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G170600 [exp] 134 / 7e-34 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.014G134601 [exp] 126 / 4e-32 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 122 / 3e-30 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G214500 [exp] 115 / 1e-27 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.007G121200 [exp] 99 / 6e-22 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.008G125200 [exp] 97 / 3e-21 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.017G039301 [exp] 96 / 4e-21 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002578 [exp] 376 / 1e-124 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 237 / 7e-71 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 126 / 2e-31 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10041096 [exp] 109 / 6e-26 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 100 / 3e-22 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 98 / 8e-22 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10015098 [exp] 97 / 1e-21 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10041526 [exp] 95 / 7e-21 AT2G33500 115 / 1e-32 B-box type zinc finger protein with CCT domain (.1.2) Lus10034625 [exp] 94 / 6e-20 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10026909 [exp] 79 / 1e-15 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.003G166000.4 pacid=42785257 polypeptide=Potri.003G166050.1.p locus=Potri.003G166000 ID=Potri.003G166000.4.v4.1 annot-version=v4.1 ATGTACAAAAGCTGCTGCTGGCTGTTGCTCTACATTGAATTATTATTATTATTATTAATTTATTCACCTTTTACTACAAAAAGAAAGAAAGAAGTATCTC TTCTTCCTCCTTTCACTCCCAAAACACTCTCTTCCTCATTTCTCTTTAGGGTTTCGCTTTTCTTAGCAGATAAAAATATGGTTACCCACAATTCAAAGAC CAAAGAAACAGTACCATGTGATTTCTGCAGTGAACAAACTGCAGTTCTTTACTGCAGAGCCGACTCCGCAAAACTTTGTTTATTCTGCGATCAACATGTC CACTCCGCAAACCTTCTCTCACGCAAGCATGTCCGCGCACAGATCTGCGACAATTGCAACTCGGAGCTTGTTTCTGTCCGCTGCGCAACTGACAATTTGG TACTCTGTCAAGAGTGTGATTGGGATGCTCACGGTAGTTGTTCCGTGTCCGCTTCACACGATCGTACTATTATTGAAGGGTTTTCCGGTTGTCCCACAGC TCTTGATTTGGCTTCTATATGGGGTTTTGATTTGGAAGAGAAGAAGCAGGAGCCGTTGATTGAAAAATGGAGTACTAATAGTTGTGGGGTCGTCCATGAT TTGGTGAATGAGCCTTGGGTTTATAATAAATCTAGTGGTAATTTTAGTTTTCAGGACTTGATGGTGCCAAATGAAAACAGTAATAATGGTAATAGGAATG TTGACAATGTTATGGTTTTTGGAAATGTGAGCAAGAGTCCAAGTTGTGGGAAATACAAGCATGTGATATATAAGCAGTTGGTGGAGTTGTTAAAGAGGGA TTTGATGGGTGGTGGTGGCGGTGGCGGTGAGGGTGGTGGTGGTGGTGATGATGAGGGTGGTGATTTTGGTGACGGGGAGGGTTGTGATTTTGGCGGTGGT GATGGTAGAGAAGGAGAGAATTTGGTGCCAGAGACGCAGAGTAGGAGTGCGTGGCGGGAGGGTGTGGGATTTGGGAATGGGAATGGGAATGGGAATGGCG GGCGTTTTGGGAATGATAATGTCGGTGGTGGTGGTAGTGATGGTAATGTTAGAGGTGAGCAATTGTTGCACGAACAAATGCCGTTTACTTCTTTGCTTAT GCTGCCGACGGAGGTGGGTGTCAAGTCTAATGGAAAACTTATCGGTGAGGATATAATGTGGGACAGTAATGCCAATGCTCATGGCACTCAGATATGGGAT TTTCATTTAGGGCAACTGAGGAGTCATGATGAATCTGGCCAATTAGAAATCGAGTATGGTGCAAACGATGCAGGATTTGTGATCAAGAATTTCAGTGAAC CAATGAAAGAAACATCTTTAACCAACACGAAAATGTTGGGAAACATGTACCAGATGAATTGCTCCATCGTGCATGATGATATGGCATCATTTAATAACAA CTTAAATAATAACTTAACATCCAGCCAGGGACCAGCAACATCTGAAAGTAACAACCTCCCTATTGCAAGAGTGTTGTCAGGCACAGCTTTTTGTAAACCA AAATGTTCAGGTAGCTCTAAAGATGTCCAGTTTATGGAACAGTCTATTCTCGTAAGAGGTGAAGGCTTCAAAACAGAAGCAGCAACCAAGGTTGACATGG AGCTGTTGGTGCGGAATAGAGGTGATGCTATGCAACGTTACAAGGAGAAGAAGAAAACCCGAAGATATGATAAGCACATACGGTATGAATCAAGAAAGGC GAGAGCTGATTCCAGGAAGCGAGTGAAGGGTCGATTTGTGAAGACAACTGAAGCTCCTGACTGTTGA
AA sequence Show only first row Show all	>Potri.003G166000.4 pacid=42785257 polypeptide=Potri.003G166050.1.p locus=Potri.003G166000 ID=Potri.003G166000.4.v4.1 annot-version=v4.1 MYKSCCWLLLYIELLLLLLIYSPFTTKRKKEVSLLPPFTPKTLSSSFLFRVSLFLADKNMVTHNSKTKETVPCDFCSEQTAVLYCRADSAKLCLFCDQHV HSANLLSRKHVRAQICDNCNSELVSVRCATDNLVLCQECDWDAHGSCSVSASHDRTIIEGFSGCPTALDLASIWGFDLEEKKQEPLIEKWSTNSCGVVHD LVNEPWVYNKSSGNFSFQDLMVPNENSNNGNRNVDNVMVFGNVSKSPSCGKYKHVIYKQLVELLKRDLMGGGGGGGEGGGGGDDEGGDFGDGEGCDFGGG DGREGENLVPETQSRSAWREGVGFGNGNGNGNGGRFGNDNVGGGGSDGNVRGEQLLHEQMPFTSLLMLPTEVGVKSNGKLIGEDIMWDSNANAHGTQIWD FHLGQLRSHDESGQLEIEYGANDAGFVIKNFSEPMKETSLTNTKMLGNMYQMNCSIVHDDMASFNNNLNNNLTSSQGPATSESNNLPIARVLSGTAFCKP KCSGSSKDVQFMEQSILVRGEGFKTEAATKVDMELLVRNRGDAMQRYKEKKKTRRYDKHIRYESRKARADSRKRVKGRFVKTTEAPDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28050	CO	COL15	B-box type zinc finger protein...		Potri.003G166000 [exp]	0	1
AT5G43310			COP1-interacting protein-relat...		Potri.010G070200 [exp]	11.66	0.6420
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.001G183000 [exp]	14.56	0.6115
AT1G77460			Armadillo/beta-catenin-like re...		Potri.005G180100 [exp]	16.70	0.6380
AT2G32250	FAR1_related	FRS2	FAR1-related sequence 2 (.1.2....		Potri.016G018100 [exp]	36.87	0.5543
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Potri.001G035700 [exp]	37.29	0.5875
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	41.27	0.6023	Pt-UBP27.1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	42.89	0.5837
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	44.49	0.5916
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.005G214300 [exp]	46.95	0.5931
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	61.63	0.5615

Compare expression of checked genes

Potri.003G166000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.