Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43740 275 / 1e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G21090 275 / 1e-94 Leucine-rich repeat (LRR) family protein (.1) AT1G71830 238 / 5e-75 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 227 / 6e-71 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT4G33430 219 / 4e-68 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 214 / 4e-66 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 194 / 1e-58 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G25560 129 / 1e-34 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G31420 129 / 2e-34 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT1G60800 128 / 4e-34 NIK3 NSP-interacting kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061600 [exp] 397 / 1e-142 AT5G21090 272 / 2e-93 Leucine-rich repeat (LRR) family protein (.1) Potri.009G018800 [exp] 276 / 8e-95 AT5G21090 354 / 6e-126 Leucine-rich repeat (LRR) family protein (.1) Potri.001G219500 [exp] 269 / 5e-92 AT5G21090 348 / 2e-123 Leucine-rich repeat (LRR) family protein (.1) Potri.001G296500 [exp] 252 / 2e-85 AT3G43740 278 / 1e-95 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.009G090700 [exp] 245 / 1e-82 AT3G43740 270 / 2e-92 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.005G083300 [exp] 230 / 6e-72 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.013G117200 [exp] 229 / 8e-72 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G082400 [exp] 229 / 2e-71 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.019G087700 [exp] 227 / 5e-71 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002579 [exp] 342 / 6e-121 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10001807 [exp] 278 / 1e-95 AT5G21090 227 / 9e-76 Leucine-rich repeat (LRR) family protein (.1) Lus10002117 [exp] 249 / 4e-84 AT3G43740 273 / 9e-94 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10013902 [exp] 251 / 1e-77 AT1G49870 454 / 2e-145 unknown protein Lus10020962 [exp] 228 / 3e-71 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10026751 [exp] 203 / 7e-67 AT5G21090 250 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) Lus10004958 [exp] 200 / 4e-65 AT1G34210 215 / 2e-66 somatic embryogenesis receptor-like kinase 2 (.1) Lus10042755 [exp] 188 / 2e-60 AT5G21090 199 / 8e-65 Leucine-rich repeat (LRR) family protein (.1) Lus10028716 [exp] 192 / 1e-57 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006057 [exp] 158 / 3e-45 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G166200.1 pacid=42784503 polypeptide=Potri.003G166200.1.p locus=Potri.003G166200 ID=Potri.003G166200.1.v4.1 annot-version=v4.1 ATGGCAAGCTGTACTGTGTTACATCTTCTCGTTCTTGTTCTTCCATCAATCATTCTAGCACTAACAAATGCAAATTTAGAAGGGGATGCTTTGTACGCTC TGAGGAGAGCAGTGAAGGATCCAGGGCATGTTCTCCAGAGCTGGGACCCAAACTTGGTGGATCCATGTACTTGGTTCCACGTTACCTGCGATGGTGATAA TCGGGTTACCCGACTAGACCTGGGAAACGCAAAGCTTTCAGGCAGTCTGGTTCCTGAGTTGGGGAAGCTCGTCCGTCTTCAGTATCTGGAACTGTACATG AATGAACTGGCGGGTCCTATACCAAGGGAACTTGGAAACCTGAAGAGCCTTGTGAGCTTGGATCTATATCACAACAACCTCACTGGGACCATTCCTGCTT CACTTTCTAAGCTTTCCAATCTTAAATTCCTGAGACTGAACAGCAACAGACTGACTGGAAGGATACCAAGAGAACTGACCAAATTGGAGAGCCTAAAGAT CATTGACGTGTCAAACAATGATTTATGTGGCACCATACCTGCCTCAGGTTCTTTCTCCAAGTTCACAGAGGAAAGTTTTGTGAATAACTCAAGACTGGAA GGACCGGAACTGATGGGATTTGTGAGATACGGTGCTGCCGGAAGCTGTAAATGA
AA sequence Show only first row Show all	>Potri.003G166200.1 pacid=42784503 polypeptide=Potri.003G166200.1.p locus=Potri.003G166200 ID=Potri.003G166200.1.v4.1 annot-version=v4.1 MASCTVLHLLVLVLPSIILALTNANLEGDALYALRRAVKDPGHVLQSWDPNLVDPCTWFHVTCDGDNRVTRLDLGNAKLSGSLVPELGKLVRLQYLELYM NELAGPIPRELGNLKSLVSLDLYHNNLTGTIPASLSKLSNLKFLRLNSNRLTGRIPRELTKLESLKIIDVSNNDLCGTIPASGSFSKFTEESFVNNSRLE GPELMGFVRYGAAGSCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.003G166200 [exp]	0	1
AT5G27370			Protein of unknown function (D...		Potri.013G027200 [exp]	5.29	0.9517
AT1G54070			Dormancy/auxin associated fami...		Potri.001G164800 [exp]	5.56	0.9510
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.006G186301 [exp]	8.94	0.9694
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	9.89	0.9381
					Potri.010G007844 [exp]	11.66	0.9501
AT1G65810			P-loop containing nucleoside t...		Potri.008G142960 [exp]	12.56	0.9415
AT5G63380			AMP-dependent synthetase and l...		Potri.015G092300 [exp]	13.30	0.9456
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Potri.007G090900 [exp]	13.85	0.9522
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	13.85	0.9440	CLV1.2
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Potri.006G248000 [exp]	18.00	0.9643

Compare expression of checked genes

Potri.003G166200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.