Plant FIBer expression Database

Potri.003G166300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33490 493 / 9e-168 hydroxyproline-rich glycoprotein family protein (.1)
AT3G26910 333 / 5e-106 hydroxyproline-rich glycoprotein family protein (.1.2)
AT5G41100 312 / 5e-98 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G061500
[exp]
910 / 0 AT2G33490 478 / 8e-162 hydroxyproline-rich glycoprotein family protein (.1)
Potri.001G324800
[exp]
522 / 2e-178 AT2G33490 421 / 2e-139 hydroxyproline-rich glycoprotein family protein (.1)
Potri.017G063000
[exp]
513 / 7e-175 AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002580
[exp]
527 / 1e-180 AT2G33490 484 / 3e-164 hydroxyproline-rich glycoprotein family protein (.1)
Lus10001808
[exp]
501 / 3e-168 AT2G33490 475 / 1e-158 hydroxyproline-rich glycoprotein family protein (.1)
Lus10032001
[exp]
444 / 3e-148 AT2G33490 473 / 8e-160 hydroxyproline-rich glycoprotein family protein (.1)
Lus10035172
[exp]
397 / 7e-130 AT2G33490 436 / 2e-145 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence
>Potri.003G166300.1 pacid=42786182 polypeptide=Potri.003G166300.1.p locus=Potri.003G166300 ID=Potri.003G166300.1.v4.1 annot-version=v4.1
ATGAAATCATTTAGGAAATTGAGAGGATTTGCTTCACTTCACAAACAAGTAGTACATAAAAACCCAAGGGATCTTCCCTCCTTCTCTCAATCACATGAGC
TTGCTAAAGCCTCTCAGGACATGAAAGATATGAAAGATTGCTATGATAGCTTACTTTCTGCTGCCGCTGGAACCGCCAATTGTGCCTTTGAATTCTCAGA
ATCACTGCGTGAAATGGGTGCTTGCCTTCTTGCGAAAACTGCATTGAATGATGATGAAGAAAGTGGCAGGGTCTTGCTGATGCTGGGAAAAGTGCAATTT
GAACTCCAGAAACTTGTTGACTGCTATCGTTCTCACATAAATCAGACAATCATAAGCCCGTCAGAGTCTCTTCTGAATGAACTTCAAATAGTTGAGGAGA
TGAAGCAGCAGTGTGATGAGAAAAGAGATGTATATGCTCACATGGCGAGACAGAGAGAAAGAGTGAGTGGAAGAAATGGAAAGGGAGAGTGTTTTTCTAT
GCAGCAAATACAAGCAGCTCATGATGAATATGATGAGGAGGCCACTTTGTTTGTTTTTCGTCTTAAATCCCTGAAGGAAGGACAATCTCGCAGTCTTCTT
ACACAGGCGGCTCGGCACCATGCTGCTCAGCTCTGCTTCTTTAAGAAGGCTCTTCAATCTCTTGAAGCTGTTGAGCCGCATGTCAAATTGGTCTCAGAAC
AGCAGCATATAGATTACCACTTTAGTGGCCTTGATGATGATGGGAGGGATTATGATGATGATGAAGATTATGATGATGCCATTGATGATGGAGAATTGAG
CTTTGACTATGGACAAAATGACCAGGAGCAAGAAGTTTCCAAATCAATAAAGTCAATGGAGTTGGATTTAGAGGACATTACATTTCCCCAAGTTGTGACA
TTGGAAATGGCAAAGGAAAATCCAGATACAAGTTACAGGACATCGTTTCCTATTAAGGGAGAACTTAGTGCAGGCACCCAATCAGCTCCACTTTTTGCTC
AAGTGAAATCTAATCCAGCTGGAAAAACAAAACAACTGATGCCATCATCCACCCGAAAGTTCAACACTTATGTGTTGCCTACTCCAGCAGACCCAAAGAG
TTCAAATTCTACAGGACCTGGTAGCCCGGTTTCTCAAACATTAAAGACAAGTTTGAGTGGACGTCCTCTGAATTTGTGGCACTCATCCCCTATTGGCCAT
AAAAAAAATGATAAGTTACTAGGAGTTGAAATGTCTAGCAAGCCCCCTGCTATAAATTCGCAGTCAGTACTCAAGGAGAGCAACAACAACACGGCATCCA
CCCGATTACCTCCTCCTCTAGCTGATGGACTCTTTTTTTCAAGGCTTGAGCCACCAGCTGGCGCTGAATCTAAGAAAATCAAAAGATATGCCTTTTCTGG
TCCTATTTCATCCCAGCCATGGTCTACCAAGGCAGTCTCCGCAGAACATCCACAATTGTTCTCTGGACCCCTTTTGCGAAATCCAACGGCCCAATTATTT
TCATCACCTCCGAAAGTGTCTCCAAGAATTTCACCAAAAGTATCTCCTAGTTCTTCCCCTCCATTTGTGTCCTCACCCAAAATCAGCGAGCTACATGAGC
TTCCCAGACCCCCAGTCAGTTCAACCTCCAAGTCTCCGGGGGCTGGAGGTTTGGTTGGTCATTCAGCTCCACTGTTGCCCAAAGGCCACATGCTTCCTGG
TACAAGCAAAACGTCAGCATCAAATGTAGAATCTCAACTGCCTACACCTTCTCAAGTTGTCCCTCGCAGTTTTTCAATACCCTCTAGCAGACATAGAGTA
ATGGTCGCTCAGAATTCAGGGATTGTTGAGAATGTTGCCTCACCTCCTCTAACCCCAATATCTTTATCTAACACCCAGCCATCATCCACTGGTTCCCGGA
TCGTCAATCAGACAGTTCAAATCAGAGGTGCAGTTTGA
AA sequence
>Potri.003G166300.1 pacid=42786182 polypeptide=Potri.003G166300.1.p locus=Potri.003G166300 ID=Potri.003G166300.1.v4.1 annot-version=v4.1
MKSFRKLRGFASLHKQVVHKNPRDLPSFSQSHELAKASQDMKDMKDCYDSLLSAAAGTANCAFEFSESLREMGACLLAKTALNDDEESGRVLLMLGKVQF
ELQKLVDCYRSHINQTIISPSESLLNELQIVEEMKQQCDEKRDVYAHMARQRERVSGRNGKGECFSMQQIQAAHDEYDEEATLFVFRLKSLKEGQSRSLL
TQAARHHAAQLCFFKKALQSLEAVEPHVKLVSEQQHIDYHFSGLDDDGRDYDDDEDYDDAIDDGELSFDYGQNDQEQEVSKSIKSMELDLEDITFPQVVT
LEMAKENPDTSYRTSFPIKGELSAGTQSAPLFAQVKSNPAGKTKQLMPSSTRKFNTYVLPTPADPKSSNSTGPGSPVSQTLKTSLSGRPLNLWHSSPIGH
KKNDKLLGVEMSSKPPAINSQSVLKESNNNTASTRLPPPLADGLFFSRLEPPAGAESKKIKRYAFSGPISSQPWSTKAVSAEHPQLFSGPLLRNPTAQLF
SSPPKVSPRISPKVSPSSSPPFVSSPKISELHELPRPPVSSTSKSPGAGGLVGHSAPLLPKGHMLPGTSKTSASNVESQLPTPSQVVPRSFSIPSSRHRV
MVAQNSGIVENVASPPLTPISLSNTQPSSTGSRIVNQTVQIRGAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33490 hydroxyproline-rich glycoprote... Potri.003G166300
[exp]
0 1
AT2G01060 GARP myb-like HTH transcriptional r... Potri.006G000800
[exp]
2.44 0.8384
AT5G52530 dentin sialophosphoprotein-rel... Potri.017G142600
[exp]
3.16 0.8637
AT5G52530 dentin sialophosphoprotein-rel... Potri.004G079000
[exp]
4.69 0.8203
AT2G27090 Protein of unknown function (D... Potri.009G159000
[exp]
5.74 0.8488
AT1G34320 Protein of unknown function (D... Potri.013G115300
[exp]
6.48 0.8031
AT4G08500 ARAKIN, ATMEKK1... MAPK/ERK kinase kinase 1 (.1) Potri.005G172200
[exp]
9.79 0.8107 MEKK1.1
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Potri.001G169900
[exp]
13.71 0.8434
AT3G15355 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.011G118800
[exp]
15.81 0.8226
AT3G29400 ATEXO70E1 exocyst subunit exo70 family p... Potri.017G093966
[exp]
16.97 0.8306
AT1G78310 VQ motif-containing protein (.... Potri.002G099900
[exp]
17.88 0.8057

Potri.003G166300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.