Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13180 309 / 1e-106 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT2G33480 256 / 9e-86 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT3G15510 194 / 3e-60 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT3G04070 192 / 7e-60 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G61110 188 / 2e-58 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G69490 186 / 3e-58 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G77450 183 / 2e-57 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G01720 175 / 8e-54 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G65910 181 / 6e-53 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G03200 177 / 2e-52 NAC ANAC045 NAC domain containing protein 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061200 [exp] 466 / 7e-169 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G103500 [exp] 268 / 6e-91 AT5G13180 229 / 2e-75 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.015G102100 [exp] 257 / 1e-86 AT5G13180 232 / 8e-77 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.011G046700 [exp] 203 / 1e-63 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 200 / 1e-62 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.001G404400 [exp] 199 / 4e-62 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G123500 [exp] 199 / 4e-62 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G325100 [exp] 194 / 1e-61 AT5G13180 163 / 2e-49 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.019G031400 [exp] 196 / 6e-61 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002581 [exp] 332 / 7e-116 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10001809 [exp] 325 / 3e-113 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10011215 [exp] 201 / 8e-63 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10018469 [exp] 198 / 7e-62 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10030446 [exp] 196 / 8e-62 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10032657 [exp] 198 / 1e-61 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10043095 [exp] 198 / 2e-61 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10026617 [exp] 191 / 6e-60 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10023179 [exp] 193 / 9e-60 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10015076 [exp] 192 / 1e-59 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.003G166500.1 pacid=42785704 polypeptide=Potri.003G166500.1.p locus=Potri.003G166500 ID=Potri.003G166500.1.v4.1 annot-version=v4.1 ATGGAGAAGCTTAATTTTGTTAAGAATGGTGCTGTTAGATTGCCTCCTGGATTTAGGTTCCACCCTACAGACGAGGAGCTTGTAGTCCAGTACTTGAAGA GAAAGGTGTTTGCTTGCCCCTTGCCTGCTTCCATAATCCCTGAAGTCGATGTTTGCAAGTCTGACCCTTGGGATTTGCCAGGTGATTTGGACCAGGAGAG GTACTTTTTCAGCACCAGAGAAGCCAAGTATCCCAACGGGAATCGATCCAACAGAGCCACAGGCTCTGGCTACTGGAAGGCAACTGGAATAGACAAGCAA ATTGTGACTTCTAAGGGCAATCAAGCTGTGGGGATGAAGAAAACTCTGGTTTTTTACAGAGGAAAACCCCCCCATGGCACTAGGACTGATTGGATCATGC ATGAATACCGTCTTGCTAGCACCGAAACCGCAGCCTGCAATGCCCTGCTAAATAAGAACTCAATTCAGGGCTCTGTTGCGGTGCCAATGGAAAATTGGGT TCTGTGCCGCATATTTTTGAAGAAGAGGAGCACCAAAAATGAGGAAGAAAACATGCAATTTGACAATGATAATAGACTGTCCAAGCTCAGGACCACAAAG CCTGTTTTCTATGATTTCATGACAAAGCACAGGACAACTGATTTGAATCTAGCTCCTTCATCATCCTCAGGGTCCAGTGGAATCACAGAGGTGTCTTGTA ATGAATCAGATGATCACGAAGAAAGCAGTAGTTGCAATAGTTTTCCTTATTTTAGAAGAAAACCATAA
AA sequence Show only first row Show all	>Potri.003G166500.1 pacid=42785704 polypeptide=Potri.003G166500.1.p locus=Potri.003G166500 ID=Potri.003G166500.1.v4.1 annot-version=v4.1 MEKLNFVKNGAVRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLPGDLDQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQ IVTSKGNQAVGMKKTLVFYRGKPPHGTRTDWIMHEYRLASTETAACNALLNKNSIQGSVAVPMENWVLCRIFLKKRSTKNEEENMQFDNDNRLSKLRTTK PVFYDFMTKHRTTDLNLAPSSSSGSSGITEVSCNESDDHEESSSCNSFPYFRRKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.003G166500 [exp]	0	1
AT2G31130			unknown protein		Potri.013G118000 [exp]	3.00	0.8544
AT5G10980			Histone superfamily protein (....		Potri.005G072300 [exp]	5.91	0.8062
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Potri.009G124900 [exp]	5.91	0.7999
AT1G52343			unknown protein		Potri.003G055200 [exp]	6.32	0.8445
AT1G10970		ATZIP4, ZIP4	zinc transporter 4 precursor (...		Potri.018G053300 [exp]	8.66	0.7772
AT3G08505	C3HZnF		zinc finger (CCCH-type/C3HC4-t...		Potri.004G134400 [exp]	16.12	0.7824
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	17.40	0.8200
AT3G15750			Essential protein Yae1, N-term...		Potri.001G024000 [exp]	20.56	0.7924
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	21.21	0.8023
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G327100 [exp]	22.44	0.7798	TCP20.1

Compare expression of checked genes

Potri.003G166500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.