Plant FIBer expression Database

Potri.003G166700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43280 136 / 6e-40 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
AT4G16210 51 / 1e-07 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
AT4G16800 46 / 8e-06 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G061000
[exp]
176 / 5e-55 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Potri.008G104500
[exp]
59 / 2e-10 AT4G16210 422 / 3e-151 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Potri.010G146400
[exp]
56 / 3e-09 AT4G16210 418 / 2e-149 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Potri.001G153300
[exp]
47 / 2e-06 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Potri.003G080800
[exp]
43 / 7e-05 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Potri.008G220400
[exp]
41 / 0.0004 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1)
Potri.010G011900
[exp]
40 / 0.0008 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011336
[exp]
155 / 1e-46 AT5G43280 404 / 8e-144 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Lus10002583
[exp]
148 / 4e-44 AT5G43280 399 / 1e-141 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Lus10016920
[exp]
48 / 2e-06 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1)
Lus10010994
[exp]
45 / 1e-05 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0127 ClpP_crotonase PF00378 ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence
>Potri.003G166700.1 pacid=42787467 polypeptide=Potri.003G166700.1.p locus=Potri.003G166700 ID=Potri.003G166700.1.v4.1 annot-version=v4.1
ATGAATTTTATCAAGAAGCCCTACAAAGCCGGAAATGGAGCACTACTATACTCTCCATATCTTCAAAAAAATCCCCAAATCCAGGTGTTTTCCACTTCAA
ATCTCGACCGCCTATCTCAGCGCAATGTCTTATCACGTGACTTCCCCGCCGAATTCGCAATTGCTCTCCAATCCCTCGACCAAAACCCTAACGCGTTTGT
CATCATCCTTCTTCTCCGGAATCGACATCAGAACTCTAAACTCTATCACCAACGATTCTGGCGACTGACAAGACCTAAAGTTCATGCAGACGCGATCACA
GCGATCGAGCGGTGCAGGAAGCCGGTGATCGCTGCGATAGAAGGAGCGTGTATTGGTGGCGGTACTGATATTGTGATAGCCTGTGACATTTGGTTCCGCA
GTAAAGATGCTTTCTTTTCGGTGAAGGAAGCTGGTTTGGGGTTAACGGCGGATTCATGGACATTACAGAGGTTGTCGGGGATTATTGAGCTTGGTAATGC
AATGGAATTGGCCTTGACTGGTCTGAGGTTCTCGGGTCAGGAAGCCAGGGATTTGGGTTTGGTTTATCGGGTTTTTGGGTCTAGAGGGATTGCACGCGGG
TGTGAGAATCACAGCATTTATTGGTTTTAG
AA sequence
>Potri.003G166700.1 pacid=42787467 polypeptide=Potri.003G166700.1.p locus=Potri.003G166700 ID=Potri.003G166700.1.v4.1 annot-version=v4.1
MNFIKKPYKAGNGALLYSPYLQKNPQIQVFSTSNLDRLSQRNVLSRDFPAEFAIALQSLDQNPNAFVIILLLRNRHQNSKLYHQRFWRLTRPKVHADAIT
AIERCRKPVIAAIEGACIGGGTDIVIACDIWFRSKDAFFSVKEAGLGLTADSWTLQRLSGIIELGNAMELALTGLRFSGQEARDLGLVYRVFGSRGIARG
CENHSIYWF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G43280 ATDCI1 "delta\(3,5\),delta\(2,4\)-die... Potri.003G166700
[exp]
0 1
AT3G26922 F-box/RNI-like superfamily pro... Potri.011G104300
[exp]
4.89 0.8683
AT3G27700 C3HZnF zinc finger (CCCH-type) family... Potri.001G351532
[exp]
10.72 0.8404
AT2G43250 unknown protein Potri.007G124700
[exp]
10.72 0.8666
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.016G023100
[exp]
11.66 0.8733
AT1G71800 CSTF64 cleavage stimulating factor 64... Potri.002G061200
[exp]
13.41 0.8554
AT1G31220 Formyl transferase (.1) Potri.012G107500
[exp]
20.27 0.8688
AT3G16910 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-... Potri.008G108000
[exp]
21.21 0.8398
AT3G50910 unknown protein Potri.005G120600
[exp]
22.80 0.8561
AT5G58870 FTSH9 FTSH protease 9 (.1) Potri.009G043100
[exp]
23.91 0.8545
AT5G49220 Protein of unknown function (D... Potri.008G213300
[exp]
25.74 0.8289

Potri.003G166700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.