Gene [POPLAR] | FIBexDB

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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G13170	291 / 8e-99	SAG29, SWEET15, AtSWEET15	senescence-associated gene 29 (.1)
AT3G48740	233 / 9e-76	SWEET11, AtSWEET11	Nodulin MtN3 family protein (.1)
AT5G50800	233 / 1e-75	SWEET13, AtSWEET13	Nodulin MtN3 family protein (.1)
AT5G23660	232 / 2e-75	MTN3, SWEET12, AtSWEET12	homolog of Medicago truncatula MTN3 (.1)
AT4G25010	228 / 5e-74	SWEET14, AtSWEET14	Nodulin MtN3 family protein (.1)
AT5G50790	220 / 1e-70	SWEET10, AtSWEET10	Nodulin MtN3 family protein (.1)
AT2G39060	202 / 3e-64	SWEET9, AtSWEET9	Nodulin MtN3 family protein (.1)
AT3G16690	149 / 8e-44	SWEET16, AtSWEET16	Nodulin MtN3 family protein (.1)
AT4G15920	148 / 3e-43	SWEET17, AtSWEET17	Nodulin MtN3 family protein (.1)
AT1G21460	130 / 3e-36	SWEET1, AtSWEET1	Nodulin MtN3 family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.001G060900 [exp]	402 / 2e-142	AT5G13170	294 / 9e-100	senescence-associated gene 29 (.1)
Potri.015G101700 [exp]	253 / 5e-84	AT5G23660	312 / 3e-107	homolog of Medicago truncatula MTN3 (.1)
Potri.012G103200 [exp]	233 / 8e-76	AT5G50790	230 / 1e-74	Nodulin MtN3 family protein (.1)
Potri.015G101600 [exp]	232 / 1e-75	AT5G50790	276 / 1e-92	Nodulin MtN3 family protein (.1)
Potri.015G101500 [exp]	228 / 7e-74	AT5G50790	291 / 6e-99	Nodulin MtN3 family protein (.1)
Potri.015G101400 [exp]	225 / 5e-73	AT5G50790	276 / 7e-93	Nodulin MtN3 family protein (.1)
Potri.019G030500 [exp]	210 / 2e-67	AT2G39060	272 / 3e-92	Nodulin MtN3 family protein (.1)
Potri.005G023900 [exp]	155 / 4e-46	AT3G16690	190 / 2e-60	Nodulin MtN3 family protein (.1)
Potri.013G013800 [exp]	156 / 5e-46	AT4G15920	214 / 3e-69	Nodulin MtN3 family protein (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10000310 [exp]	257 / 3e-85	AT5G13170	295 / 3e-100	senescence-associated gene 29 (.1)
Lus10015754 [exp]	257 / 4e-85	AT5G13170	289 / 7e-98	senescence-associated gene 29 (.1)
Lus10003143 [exp]	252 / 2e-83	AT5G13170	295 / 4e-100	senescence-associated gene 29 (.1)
Lus10016742 [exp]	224 / 5e-72	AT5G50790	291 / 2e-98	Nodulin MtN3 family protein (.1)
Lus10032553 [exp]	223 / 1e-71	AT5G50790	279 / 9e-94	Nodulin MtN3 family protein (.1)
Lus10024770 [exp]	222 / 2e-71	AT5G23660	259 / 4e-86	homolog of Medicago truncatula MTN3 (.1)
Lus10011335 [exp]	221 / 4e-71	AT5G13170	268 / 1e-89	senescence-associated gene 29 (.1)
Lus10009782 [exp]	220 / 1e-70	AT5G23660	261 / 8e-87	homolog of Medicago truncatula MTN3 (.1)
Lus10022436 [exp]	218 / 1e-69	AT5G50790	285 / 5e-96	Nodulin MtN3 family protein (.1)
Lus10040901 [exp]	216 / 8e-69	AT5G13170	236 / 8e-77	senescence-associated gene 29 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0141 [poplar] [flax]	MtN3-like	PF03083 [poplar] [flax]	MtN3_slv	Sugar efflux transporter for intercellular exchange

Representative CDS sequence

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>Potri.003G166800.1 pacid=42786084 polypeptide=Potri.003G166800.1.p locus=Potri.003G166800 ID=Potri.003G166800.1.v4.1 annot-version=v4.1

ATGGCAGTGACGAGCATTCTCCATTTGGCATTCACATTCGGCATTCTAGGAAACATTATTTCAACCATGGTGTACTTGGCTCCAGTGCCAACATTTATCC

GAATTTTCAAAAAAAAATCAACAGAAGATTTCCAATCGTTGCCTTATCTCATGGCATTGTTCAGTTCTATGCTTTGGCTCTACTATGCAATGCTCAAAAA

AGATACAATTCTTCTTGTCACCATCAACTCATTTGGATGTGTCATAGAGACTACTTACATTGCCATCTATATTGTTTATGCAACAAGAGAGAGCAGGGTC

TCAACAATCAAACTACTTATTTCTATGAACTTGGGGTTGTTCTCTTTGATCCTTCTCCTTGCACATTTTCTAGTGAGTGGTTCAGTACGTGTTAAGGTTC

TTGGTTGGCTTTGTGTTGCCTTGTCCGTGTGCGTCTTTGCAGCACCTTTAAACATCCTGAAACAAGTAATTCGAACAAAGAGCGTAGAGTTCATGCCGTT

CACCCTGTCATTTTTCCTTACTTTGAGCGCGGTCATGTGGTTTGCCTATGGCCTTTTACTCAAGGACTTGTGTATCGCTCTTCCGAACATCTTGGGCTTC

ATCTTGGGGTTACTTCAGATGCTGCTATATGGGATCTACAGGAATGCACAGAAGGTTGAAGAGAAAAAGAAGCTGCCAGCTGAAAACTTAAAGAGTATTG

TCATATTAAGCGCAGTAGGGGGGCCTGAAGTTTATCCGGTCGATGCAAAACCTGACGTGAATGGAGGTGCTGAGGAGCATGACCAGACAGAGGAGTCTAA

GGAGGATGAGAAAAGCATGGAAGCTTCACAGGATAAGCTCCAATCAAATGAATGTGCAGTTTGA

AA sequence

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>Potri.003G166800.1 pacid=42786084 polypeptide=Potri.003G166800.1.p locus=Potri.003G166800 ID=Potri.003G166800.1.v4.1 annot-version=v4.1

MAVTSILHLAFTFGILGNIISTMVYLAPVPTFIRIFKKKSTEDFQSLPYLMALFSSMLWLYYAMLKKDTILLVTINSFGCVIETTYIAIYIVYATRESRV

STIKLLISMNLGLFSLILLLAHFLVSGSVRVKVLGWLCVALSVCVFAAPLNILKQVIRTKSVEFMPFTLSFFLTLSAVMWFAYGLLLKDLCIALPNILGF

ILGLLQMLLYGIYRNAQKVEEKKKLPAENLKSIVILSAVGGPEVYPVDAKPDVNGGAEEHDQTEESKEDEKSMEASQDKLQSNECAV

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Potri.003G166800 [exp]	0	1
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.014G078600 [exp]	16.67	0.8543

Potri.003G166800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.003G166800 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.003G166800 coexpression network