Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PBS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13160 744 / 0 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 636 / 0 Protein kinase superfamily protein (.1.2) AT5G02800 528 / 0 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 498 / 5e-176 Protein kinase superfamily protein (.1) AT1G07870 489 / 6e-172 Protein kinase superfamily protein (.1.2) AT3G07070 478 / 1e-167 Protein kinase superfamily protein (.1) AT2G28590 468 / 1e-163 Protein kinase superfamily protein (.1) AT3G24790 463 / 1e-162 Protein kinase superfamily protein (.1) AT1G20650 460 / 5e-161 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G13190 457 / 9e-160 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060800 [exp] 898 / 0 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 682 / 0 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 679 / 0 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 558 / 0 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 557 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G133300 [exp] 530 / 0 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 513 / 0 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 503 / 8e-178 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026500 [exp] 491 / 5e-173 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015756 [exp] 802 / 0 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 654 / 0 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 648 / 0 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 558 / 0 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 554 / 0 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 538 / 0 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 537 / 0 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019897 [exp] 504 / 2e-178 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10014019 [exp] 499 / 2e-175 AT5G02800 532 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Lus10011866 [exp] 485 / 3e-170 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G166900.1 pacid=42786530 polypeptide=Potri.003G166900.1.p locus=Potri.003G166900 ID=Potri.003G166900.1.v4.1 annot-version=v4.1 ATGGGTTGTTTTTCTTGTTTTGATTCAAGGGAAGAAGAGAAGCTGAATCAAGAGAAACAATCTGTTGATCTAAAGCAAACTCTGCCTCCAGTTTCTTCTA ACATTTCTAAGTTGTCTTCTGGAGCTGACAGGTTCAAATCAAGAAGCAATGGCGAGCAATCCAAAAGGGAATTACCGAGTCCAAAGGATGCACCTGGTGT CAATATAGCTGCTCATATTTTTACTTTTCGTGAGCTTGCAGCTGCAACCAAGAATTTTAGGCCAGAGTGTTTCTTAGGGGAAGGGGGATTTGGACGTGTA TATAAAGGGCGTCTTGAGAGCACTGGTCAGGTTGTTGCTGTAAAACAATTGGATAGGAATGGCCTCCAGGGTAATAGGGAATTTCTAGTGGAGGTTCTCA TGCTGAGCCTTTTACATCATCCAAACCTTGTGAACCTGATTGGCTATTGTGCTGATGGGGATCAGCGGCTTCTTGTCTATGAATTTATGCCCTTGGGATC ATTGGAAGATCACCTTCACGACCTTCCACCTGAAAAGGAACCACTAGATTGGAACACAAGAATGAAGATAGCTGCAGGTGCAGCCAGAGGCTTAGAATAC CTGCATGATAAAGCAAGTCCTCCTGTTATTTATAGGGATTTTAAGTCATCCAACATATTACTTGAAGAAGGATTTCATCCAAAGCTTTCTGATTTTGGGC TTGCAAAGCTTGGCCCCACTGGGGACAAGTCACATGTTTCCACCAGGGTTATGGGTACTTATGGTTATTGTGCTCCTGAGTATGCCATGACCGGACAATT GACTGTAAAATCTGACGTCTACAGTTTTGGGGTAGTGTTCTTAGAGCTGATTACTGGTCGTAAAGCCATTGACAGCAGTCGACCACATGGAGAACAGAAC CTTGTGACATGGACACGTCCATTATTCAATGATCGTAGGAAATTCTCAAAATTGGCAGACCCACGACTTCAGGGACGTTATCCAATGAGAGGACTCTACC AGGCTTTAGCTGTGGCATCCATGTGCATCCAGGAGCAAGCTGCTGCACGTCCTCTCATTGGGGATGTGGTCACCGCACTTTCTTATTTAGCGAACCAGGC CTATGAACCTAATGGTCATGGCTACAGAGGTTTGGGGGACAGGGATGAGAAGAGACATAGAGAGGAGAGAGGTGGACAGTTATCAAGGAATGAGGAAGGC GGAGGATCTGGACGCAAATGGGATTTGGATGGGTCTGAGAAAGAGGACTCGCCAAGGGAAACTGCTAGGATGTTAAACAGGGATTTGGATAGAGAACGAG CTGTTGCCGAGGCCAAGATGTGGGGAGAAAATTGGAGAGAAAAAAGACGACAAAGTGCTCAAGGAAGTTTTGATGGCAGTAATGGATAG
AA sequence Show only first row Show all	>Potri.003G166900.1 pacid=42786530 polypeptide=Potri.003G166900.1.p locus=Potri.003G166900 ID=Potri.003G166900.1.v4.1 annot-version=v4.1 MGCFSCFDSREEEKLNQEKQSVDLKQTLPPVSSNISKLSSGADRFKSRSNGEQSKRELPSPKDAPGVNIAAHIFTFRELAAATKNFRPECFLGEGGFGRV YKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPEKEPLDWNTRMKIAAGAARGLEY LHDKASPPVIYRDFKSSNILLEEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSSRPHGEQN LVTWTRPLFNDRRKFSKLADPRLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSYLANQAYEPNGHGYRGLGDRDEKRHREERGGQLSRNEEG GGSGRKWDLDGSEKEDSPRETARMLNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Potri.003G166900 [exp]	0	1	Pt-PBS1.1
AT5G63905			unknown protein		Potri.002G118366 [exp]	1.73	0.8404
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	4.47	0.8424
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.007G097900 [exp]	8.06	0.8161
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.016G049800 [exp]	8.48	0.7965
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220400 [exp]	11.61	0.8377
AT3G17675			Cupredoxin superfamily protein...		Potri.003G117900 [exp]	14.79	0.8431
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.006G204300 [exp]	15.74	0.8402	B13.1
AT5G18150			Methyltransferase-related prot...		Potri.019G035000 [exp]	17.97	0.8033
AT2G24300			Calmodulin-binding protein (.1...		Potri.006G187900 [exp]	25.69	0.8250	CBP60.9
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G026600 [exp]	25.84	0.7525

Compare expression of checked genes

Potri.003G166900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.