Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13140 181 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G41050 144 / 1e-42 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G26960 141 / 2e-41 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G45880 50 / 3e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G18596 48 / 9e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT1G29140 48 / 9e-07 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G15780 49 / 2e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G08685 47 / 3e-06 SAH7 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060500 [exp] 283 / 2e-95 AT5G13140 185 / 3e-57 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G068400 [exp] 174 / 2e-54 AT5G41050 172 / 3e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.001G326200 [exp] 173 / 7e-54 AT5G41050 158 / 9e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.004G114300 [exp] 67 / 2e-12 AT5G15780 178 / 5e-52 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G100600 [exp] 65 / 1e-11 AT5G15780 173 / 1e-49 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G093100 [exp] 47 / 3e-06 AT4G08685 199 / 3e-66 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.005G167900 [exp] 46 / 4e-06 AT4G08685 171 / 3e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.005G078200 [exp] 45 / 8e-06 AT4G08685 165 / 5e-53 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.007G090100 [exp] 44 / 2e-05 AT4G08685 152 / 1e-47 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035187 [exp] 166 / 6e-51 AT5G41050 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10012553 [exp] 162 / 4e-50 AT5G41050 168 / 3e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10032018 [exp] 162 / 1e-49 AT5G41050 162 / 2e-51 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10041541 [exp] 157 / 5e-48 AT5G41050 169 / 2e-54 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10005086 [exp] 58 / 2e-09 AT5G15780 133 / 5e-35 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10034365 [exp] 58 / 2e-09 AT5G15780 129 / 7e-34 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10026040 [exp] 50 / 2e-07 AT5G10130 159 / 3e-50 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10014332 [exp] 50 / 3e-07 AT5G10130 154 / 2e-48 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10013908 [exp] 51 / 6e-07 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3) Lus10001895 [exp] 49 / 6e-07 AT1G29140 157 / 2e-49 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF01190 [poplar] [flax] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Potri.003G167100.1 pacid=42786889 polypeptide=Potri.003G167100.1.p locus=Potri.003G167100 ID=Potri.003G167100.1.v4.1 annot-version=v4.1 ATGGCTCCAATCATTATTCATGCTCTTCTAGCAACTTTGTTTGCTCTCCCACTTTCTCTCATTGCTGAACCAGCAAACAATCCAACCTCCCGAATCATTA TTGTTGGTGTTGTCTACTGTGATACCTGCTCAACCAACACTTTCTCCAGATACAGCTGCTTCTTGCCAGGTGCGGATGTTCACATTCAATGTACATTCCA AGCAATCTCACCAAAAACTACAGAGAAGATTCAGTTCTCTGCTAACAGAACAACAGATAGATATGGAATATATAAAGTGACAGTGCCAGAGGTTGATGGT GTTGATTGTGCGGTGGGATCGACAATTGAATTAGTATGCCAGGCAAGTTTAATACGGAGCTCATATCCAGCCTGCAACGTTCCTGGTTTAAAGATGTCAA CAGACGTGATATCAGTCAAGTCAAAGCAGAACAATCTCTGTATTTACAGCATGAATGCTTTGAGTTACAGACCTTCCAAAAAAAATGCTACCTTGTGTGG GAAACACAAAGAAGAGTTGCAGATTTCTTTCAACTCTTCAAAGTTTTTTCTCCCTTACTCCCCACCCTATGGGTTCCCATGGCATACCTTGCCTAACATG TCACCATCACCCTTCCCTCCATTACCTACGCCATCTCAGCCTTTTCCTCCCTTGCCATCTCCTCGCCCACCTTCTTTGCCCTTTCCATTTCCACCCCTCT CACCAACCCCATCTCTTTTCCATCCAACGCCTCCACCAGCATTTAATCTAGGAAATCCAAGGACATGGATACCGAATACCCCTTCATTAGCACCTCCACC ACCACCTGAATTTAATCTAAGAGATCCCAGAACTTGGATACCATACATCCCTCCATCCCCACCTAATAACCCTCAGAACCAAAATCCATGA
AA sequence Show only first row Show all	>Potri.003G167100.1 pacid=42786889 polypeptide=Potri.003G167100.1.p locus=Potri.003G167100 ID=Potri.003G167100.1.v4.1 annot-version=v4.1 MAPIIIHALLATLFALPLSLIAEPANNPTSRIIIVGVVYCDTCSTNTFSRYSCFLPGADVHIQCTFQAISPKTTEKIQFSANRTTDRYGIYKVTVPEVDG VDCAVGSTIELVCQASLIRSSYPACNVPGLKMSTDVISVKSKQNNLCIYSMNALSYRPSKKNATLCGKHKEELQISFNSSKFFLPYSPPYGFPWHTLPNM SPSPFPPLPTPSQPFPPLPSPRPPSLPFPFPPLSPTPSLFHPTPPPAFNLGNPRTWIPNTPSLAPPPPPEFNLRDPRTWIPYIPPSPPNNPQNQNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	0	1
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Potri.015G027600 [exp]	1.00	0.8193
AT5G11020			Protein kinase superfamily pro...		Potri.006G260100 [exp]	2.00	0.7742
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	2.00	0.7834
AT3G26935			DHHC-type zinc finger family p...		Potri.012G103300 [exp]	2.23	0.7739
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.004G208100 [exp]	3.74	0.7638
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	8.48	0.7694
					Potri.010G210400 [exp]	11.40	0.7395
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	13.85	0.7793
AT5G14980			alpha/beta-Hydrolases superfam...		Potri.001G466700 [exp]	14.35	0.6572
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.004G179742 [exp]	14.96	0.7384

Compare expression of checked genes

Potri.003G167100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.