Plant FIBer expression Database

Potri.003G167500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12060 90 / 2e-20 ATBAG5 BCL-2-associated athanogene 5 (.1)
AT2G46240 61 / 2e-09 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
AT5G62390 47 / 2e-05 ATBAG7 BCL-2-associated athanogene 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G014900
[exp]
92 / 3e-21 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1)
Potri.002G166300
[exp]
78 / 9e-15 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Potri.017G091100
[exp]
50 / 3e-06 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003798
[exp]
93 / 1e-19 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1)
Lus10010486
[exp]
89 / 1e-19 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1)
Lus10012648
[exp]
75 / 9e-14 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Lus10010133
[exp]
72 / 1e-12 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Lus10038064
[exp]
49 / 7e-06 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1)
Lus10026469
[exp]
45 / 9e-05 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1)
PFAM info
Representative CDS sequence
>Potri.003G167500.2 pacid=42785695 polypeptide=Potri.003G167500.2.p locus=Potri.003G167500 ID=Potri.003G167500.2.v4.1 annot-version=v4.1
ATGGATACTCCATTCTACAGGATTCACCGCAACTACCCTTCCTCTTCCCCTCAAATTCCAGTTCATCACAGAACGACGACGGTCCTTCCAAAGAAAGTGG
TTTCAATCCCAGTCCGCTACGTCGGGTCGGAGCGGAGCAGATCCGAATCTGCAATCAAGATCCAGAAGGTGTTTAGAGGCTTCCTGGTGAGGAAAAGCAT
GAAGAAGATTTTGGCGACAAAGAGACAAGTGGATGAGATTGAGAAGAGGATTTTGATGAAGGAGACTGTTGAATTAATGAGAAGAGATCAGAAGGAGAAG
TTGAAGATTAATGAGATGCTAATGAGTTTGTTGTTGAAGTTGGATTCGGTGCGAGGAGTGGATTCTGGTGTCAGGGATTGTAGGAAGGCGGTTATTAAAA
AGGCGATTGCGTTGCAGGAGACTGTTGATTCTATCGCTGCTGCTGCTAATGGTGATGATTCTGTTGTGTCAGCTGGAGAGAAAGGTGTGGATGAAACGGG
AGAAGGAGAGGAAGAAAATGGCAGTGTTGCGAATGCTGCTGATGAATTGCAGAATGGTGCTGCTGAGTCTGAGGCTGTTGTTTCTATGCTTGCTGACTCA
AGAGAGACCCGGGAAGAGTTTAATGGAGCTTTGGAGAATGTTGACATGGCTAGTGAAGGTGAGAGGAACGTGGAATGTGATGGTGATGTGCCGACATCGA
TGAGTGATTATTGTGATTCGGTGCGAGGAGTGGATTCTGGTGTCGGGGATTGTAGGGAGGCGGTTATTAAAAAGGCGATTGCGTTGCAGGAGACTGTTGA
TTCTATCGCTGCTGCTGCTAATGGTGATGATTCTGTTGTGTCTGCTGGAGAGAAAGGTGTGGATGAAACTGGAGAAGGAGAGGAAGAAGATGGCAGTGTT
GCTAATGCTGCTGATGAATTGCAGAATGGTGCTGCTGAGTCTGAGGCTGTTGTTTCTGTGCTTGCTGATTCAAGAGAGGCCCGGGAAGAGTTTAATGGAA
CTTTGGAGAATGTTGACATGGCTAGTGAAGGTGAGAGGAAAGTGGAATGTGATGGTGATGTGCCGACGTTGATGAGTGATTATTGTGAACCAGAGAGGGT
GCTGGAAGTGGTTAATGAAACTGTGGAATTGAAAGAGGCGGAGAATGATGAGACGGCTTGCCAAGGAGAAGATAGAGATTTGGAAAAACAAGTTGATAAA
GATGGTGATTGTATGGGAACGAGTCAGACGGAAAGTCAATCGGATTCCTCTGCGAGTTTGATGGAGGGAGATGATGAAGAAGAAGAAGAACATTCCGGTG
GGGTGGAAATTGAGAAGAAAGGGGATGAAGGAGAAGTGAAAAGCAATGATGAGAGTACAAGGAGGGGCAAAGAGTTACTGGAGAGGATGATGGAGGATAA
TGAGAGAATGATGGGATTGATGGCTGAGTTATTTGAGAGGAATGAGATGCAAACAAGGTTGTTGAGCTCGCTATCGCAGAGGGTTGAGCAACTGGAGAGG
GCTTACATATGTGACCAGTTGAGGAGAAGGAAGAAGAAGAGGAATGCTGCTGGGTTACTGGATTGTTTGGAATCAACACCCAAGAAATTGTAA
AA sequence
>Potri.003G167500.2 pacid=42785695 polypeptide=Potri.003G167500.2.p locus=Potri.003G167500 ID=Potri.003G167500.2.v4.1 annot-version=v4.1
MDTPFYRIHRNYPSSSPQIPVHHRTTTVLPKKVVSIPVRYVGSERSRSESAIKIQKVFRGFLVRKSMKKILATKRQVDEIEKRILMKETVELMRRDQKEK
LKINEMLMSLLLKLDSVRGVDSGVRDCRKAVIKKAIALQETVDSIAAAANGDDSVVSAGEKGVDETGEGEEENGSVANAADELQNGAAESEAVVSMLADS
RETREEFNGALENVDMASEGERNVECDGDVPTSMSDYCDSVRGVDSGVGDCREAVIKKAIALQETVDSIAAAANGDDSVVSAGEKGVDETGEGEEEDGSV
ANAADELQNGAAESEAVVSVLADSREAREEFNGTLENVDMASEGERKVECDGDVPTLMSDYCEPERVLEVVNETVELKEAENDETACQGEDRDLEKQVDK
DGDCMGTSQTESQSDSSASLMEGDDEEEEEHSGGVEIEKKGDEGEVKSNDESTRRGKELLERMMEDNERMMGLMAELFERNEMQTRLLSSLSQRVEQLER
AYICDQLRRRKKKRNAAGLLDCLESTPKKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12060 ATBAG5 BCL-2-associated athanogene 5 ... Potri.003G167500
[exp]
0 1
AT2G29500 HSP20-like chaperones superfam... Potri.019G081250
[exp]
1.41 0.9904
AT2G29500 HSP20-like chaperones superfam... Potri.009G147900
[exp]
3.46 0.9899
AT4G34131 UGT73B3 UDP-glucosyl transferase 73B3 ... Potri.001G303000
[exp]
5.47 0.9693
AT2G25730 unknown protein Potri.018G035601
[exp]
6.00 0.9891
Potri.002G020750
[exp]
7.74 0.9791
AT4G24160 alpha/beta-Hydrolases superfam... Potri.005G235200
[exp]
9.38 0.9662
AT3G12580 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN... Potri.001G042600
[exp]
14.86 0.9706 HSP70.9
AT1G74310 HOT1, ATHSP101 heat shock protein 101 (.1) Potri.015G057000
[exp]
15.00 0.9752
AT5G05410 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT... Potri.010G183700
[exp]
15.00 0.9617 Pt-DREB2.2
AT4G34131 UGT73B3 UDP-glucosyl transferase 73B3 ... Potri.001G303600
[exp]
16.30 0.9515

Potri.003G167500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.