Plant FIBer expression Database

Potri.003G167600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35450 468 / 1e-166 catalytics;hydrolases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037047
[exp]
486 / 8e-174 AT2G35450 450 / 2e-159 catalytics;hydrolases (.1)
Lus10015759
[exp]
223 / 1e-71 AT2G35450 207 / 9e-66 catalytics;hydrolases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF04909 Amidohydro_2 Amidohydrolase
Representative CDS sequence
>Potri.003G167600.1 pacid=42786115 polypeptide=Potri.003G167600.1.p locus=Potri.003G167600 ID=Potri.003G167600.1.v4.1 annot-version=v4.1
ATGTCAATGACATGTGGCCAAGGGTTGTTGAAGCCCTTGATATCAGCTGTTAGTGCAAGATCCTCTCACTCCTCCCACTCTTATCTGTCTACTGTTTCAG
TGTTCAAGCTCTTCACTAAAGAGACACCAACCCAAGTCTCTGCAGCAAGAATGGCCACCAGTAGCGGAGCTGACAACAAGACAAACCCCGCCAAAGTCAT
TGATTCACACTTGCACGTTTGGGCATCTCCTGAAGAGGCTGCAGGTAAATATCCTTACTTTCCAGGTCAAGAACCCACTTTACGTGGAGATTTAGATTTC
TTGTTGCAGTCCTTGGAAGAAGCAGGTGTAGATGGTGCACTCATTGTACAGCCCATTAATCATAAGTTTGACCATTCTCTAGTGACAAGTGTCCTGAAGA
AGTATCCAAACAAGTTCGTTGGTTGCTGCCTTGCAAATCCTGCAGAAGATGGAAGTGGACTCAAGCATCTCGAAGAACTTATTTTGAAGGATGGTTATCG
TGCTGTTCGCTTTAACCCATATCTGTGGTCATCAGGAGAAAAGATGACAAATGACATTGGAAAGGCACTGTTTTCCAAAGCAGGAGAACTTGGTGTACCA
GTTGGTTTCATGTGCATGAAGGGTCTCAATCTCCATATTTCAGAAATTCAGGAATTATGCACAGAGTTTCCTTCCACAGTTGTTTTGCTTGATCATTTGA
GTTTTTGCAAACCACCAACAAATGATGAAGAAAGTTTTGCCTTCTCTGAGCTTCTGAAGCTATCAAAATTCCCTCAGGTGTATATTAAATTCAGTGCCCT
GTTCAGGGTGTCAAGAATGCCATTCCCATACCAGGATCTGGCCTCCCTCCTCTCCCAAGTTGTTTCGAGCTTTGGCGCAAGCCGAGTCATGTGGGGCAGC
GATTTCCCATATGTTGTTCCCGAATGCGGTTACAAAGGTGGAAAAGAAGCAGTACTATCCATCGCCAATCAAGTACCTTTATCATCATCCGAGTTGGAGT
GGATAATGGGCAAAACAGTGATGCAACTCTTCCAAGGCCAATGGGTTCCATGA
AA sequence
>Potri.003G167600.1 pacid=42786115 polypeptide=Potri.003G167600.1.p locus=Potri.003G167600 ID=Potri.003G167600.1.v4.1 annot-version=v4.1
MSMTCGQGLLKPLISAVSARSSHSSHSYLSTVSVFKLFTKETPTQVSAARMATSSGADNKTNPAKVIDSHLHVWASPEEAAGKYPYFPGQEPTLRGDLDF
LLQSLEEAGVDGALIVQPINHKFDHSLVTSVLKKYPNKFVGCCLANPAEDGSGLKHLEELILKDGYRAVRFNPYLWSSGEKMTNDIGKALFSKAGELGVP
VGFMCMKGLNLHISEIQELCTEFPSTVVLLDHLSFCKPPTNDEESFAFSELLKLSKFPQVYIKFSALFRVSRMPFPYQDLASLLSQVVSSFGASRVMWGS
DFPYVVPECGYKGGKEAVLSIANQVPLSSSELEWIMGKTVMQLFQGQWVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G35450 catalytics;hydrolases (.1) Potri.003G167600
[exp]
0 1
AT5G14320 EMB3137 EMBRYO DEFECTIVE 3137, Ribosom... Potri.005G172600
[exp]
17.11 0.9287
AT5G11450 PPD5 PsbP domain protein 5, Mog1/Ps... Potri.006G246500
[exp]
19.07 0.9216
AT1G53520 Chalcone-flavanone isomerase f... Potri.011G101800
[exp]
21.00 0.9067
AT5G17670 alpha/beta-Hydrolases superfam... Potri.013G070700
[exp]
26.98 0.9169
AT2G41530 ATSFGH ARABIDOPSIS THALIANA S-FORMYLG... Potri.006G047000
[exp]
27.05 0.8757
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Potri.016G072100
[exp]
38.07 0.9145 Pt-BAS1.2,PtrcPrx2-cysA
AT4G34620 SSR16 small subunit ribosomal protei... Potri.013G128200
[exp]
38.80 0.9142
AT2G14880 SWIB/MDM2 domain superfamily p... Potri.001G297400
[exp]
45.79 0.9103
AT3G26040 HXXXD-type acyl-transferase fa... Potri.011G124268
[exp]
51.48 0.9087
AT3G26040 HXXXD-type acyl-transferase fa... Potri.011G124500
[exp]
59.48 0.8956

Potri.003G167600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.