Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13120 277 / 3e-94 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G62030 225 / 2e-73 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT2G29960 180 / 2e-56 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 177 / 2e-55 ROC7 rotamase CYP 7 (.1) AT2G21130 176 / 2e-55 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 176 / 2e-55 ROC1 rotamase CYP 1 (.1) AT3G56070 172 / 7e-54 ROC2 rotamase cyclophilin 2 (.1.2) AT2G16600 171 / 3e-53 ROC3 rotamase CYP 3 (.1.2) AT3G55920 171 / 6e-53 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 162 / 4e-50 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060200 [exp] 394 / 4e-140 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.002G185200 [exp] 218 / 2e-70 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.009G046500 [exp] 182 / 2e-57 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.010G189000 [exp] 178 / 2e-55 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G251700 [exp] 174 / 2e-54 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.004G168800 [exp] 172 / 5e-54 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 169 / 1e-52 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G021500 [exp] 167 / 3e-52 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 165 / 3e-51 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011330 [exp] 310 / 8e-107 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 307 / 3e-105 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10018238 [exp] 180 / 1e-56 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 180 / 1e-56 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 176 / 5e-54 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10012167 [exp] 172 / 1e-53 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10038315 [exp] 172 / 4e-53 AT2G29960 313 / 1e-109 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10007579 [exp] 170 / 4e-53 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10017258 [exp] 165 / 3e-51 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10042553 [exp] 165 / 6e-51 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.003G167700.2 pacid=42785765 polypeptide=Potri.003G167700.2.p locus=Potri.003G167700 ID=Potri.003G167700.2.v4.1 annot-version=v4.1 ATGGCGGCTTCTTTTACAACCCTGACAAATGTGGGCTCACTATCAACTCCACAAAATACTATGTTGCAGGTAAAATCAGTAAGATCCACCCAGTGTAATG CTGTGAGGTTTCCCACTAGAAATGTGTTACCGTCAAATGTTTCCTCGTCTTCATCGAGCTTCTTCTTCTCGGGTCCGCTTCGTTTTGCTTCTTTTACAAC CTCTTCTCCGAAGAAATCCCGTGTTCTCAGCTCCGTTCGAGCTAGTGCAGAGGTTGCAGAGTTACAGTCAAAGGTGACCAACAAAGTGTATTTTGATATA GGGATTGGGAATCCGGTAGGGAGGCTTGTTGGGAGAGTCGTCATTGGGTTATATGGCGATGATGTGCCACAAACGGTGGAGAACTTCCGTGCTTTATGCA CAGGAGAGAAGGGCTTCGGCTACAAAAATTCTGCTTTCCACCGTGTCATCAAAGATTTCATGATTCAAGGAGGGGACTTTGACAAAGGAAATGGCACTGG AGGTAAAAGCATATACGGTCGTACATTTAAAGATGAAAACTTCAAGTTGTCACATATTGGACCAGGAATTCTTAGTATGGCAAATGCAGGGCCCAACACC AATGGAAGCCAATTTTTCATCTGCACTGTCAAGACTCCATGGCTAGATCAGAGGCATGTTGTTTTTGGTCAAGTTTTGGAAGGCATGGACATTGTTAAAT TGATCGAGTCACAAGAGACAGACAGAGGAGACCGTCCCACAAAGAGAGTGGTGGTCCTTGAAAGTGGTGAGCTTCCCATGAATGAAGCTTGA
AA sequence Show only first row Show all	>Potri.003G167700.2 pacid=42785765 polypeptide=Potri.003G167700.2.p locus=Potri.003G167700 ID=Potri.003G167700.2.v4.1 annot-version=v4.1 MAASFTTLTNVGSLSTPQNTMLQVKSVRSTQCNAVRFPTRNVLPSNVSSSSSSFFFSGPLRFASFTTSSPKKSRVLSSVRASAEVAELQSKVTNKVYFDI GIGNPVGRLVGRVVIGLYGDDVPQTVENFRALCTGEKGFGYKNSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHIGPGILSMANAGPNT NGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLIESQETDRGDRPTKRVVVLESGELPMNEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Potri.003G167700 [exp]	0	1
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.009G077800 [exp]	1.00	0.8637
AT3G20390			endoribonuclease L-PSP family ...		Potri.011G139600 [exp]	2.44	0.8472
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160100 [exp]	3.74	0.8341	Pt-PAP.2
AT3G48550			unknown protein		Potri.012G097901 [exp]	8.00	0.8438
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077800 [exp]	14.14	0.8567
AT3G56130			biotin/lipoyl attachment domai...		Potri.008G074100 [exp]	14.69	0.8132
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	19.07	0.7981
AT5G02160			unknown protein		Potri.006G087701 [exp]	20.44	0.8626
AT1G51405			myosin-related (.1)		Potri.009G052400 [exp]	23.23	0.8336
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Potri.001G329900 [exp]	26.49	0.8428

Compare expression of checked genes

Potri.003G167700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.