Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 487 / 8e-171 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 454 / 5e-158 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 444 / 8e-154 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT3G01990 435 / 1e-150 ACR6 ACT domain repeat 6 (.1) AT1G12420 399 / 1e-136 ACR8 ACT domain repeat 8 (.1) AT4G22780 393 / 8e-134 ACR7 ACT domain repeat 7 (.1) AT5G25320 380 / 4e-128 ACT-like superfamily protein (.1) AT5G65890 361 / 4e-121 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 47 / 2e-05 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G16880 42 / 0.0006 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060100 [exp] 810 / 0 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 503 / 3e-177 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 494 / 2e-173 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 494 / 6e-173 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.005G185600 [exp] 461 / 7e-161 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 457 / 3e-159 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.001G115600 [exp] 451 / 6e-157 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.001G327000 [exp] 446 / 1e-154 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.003G116600 [exp] 436 / 6e-151 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003136 [exp] 668 / 0 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 660 / 0 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 481 / 2e-168 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10028646 [exp] 439 / 1e-151 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 440 / 2e-149 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10012550 [exp] 429 / 3e-148 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 426 / 1e-146 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10011715 [exp] 360 / 1e-120 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019191 [exp] 286 / 1e-94 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 239 / 9e-75 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.003G167800.1 pacid=42785414 polypeptide=Potri.003G167800.1.p locus=Potri.003G167800 ID=Potri.003G167800.1.v4.1 annot-version=v4.1 ATGGACTGCTGGTCTCCTCTCACAATGGATGATGAATTTGAGAAGCTTGTAATTCGAATGAACCCTCCAAGGGTTACAGTTGATAATGCCTCAAGCAGGA CAGCCACTTTGATTGAGGTTGATAGTGCTAATAAGCGTGGTAGTTTGTTAGAGGTGGTTCAGGTTTTGACTGATTTGAATCTTTTAATCAGACGAGCTTA CATTTCTTCAGATGGAGAATGGTTCATGGATGTGTTTCACGTTACAGATCAACATGGGAATAAGTTATCCGAGGATGATGTGGCTGAAAGAATTCAACAG TCACTGGGACCAAGAGGACCAAGCTTCCGATCCTTGAGACGGTCTGTGGATGTGCAAGGAGCTGCGGAGCACACAACTATTGAATTGACAGGAAGAGATC GACCAGGCTTGCTTTCAGAAATTTTTGCTGTTCTTGCTGGCCTCAAATGTAATGTGGTGGCCTCAGAAATATGGACCCACAATTCAAGAATGGCATCTGT TGTTTACATCACTGATGAGGCTACTGGATTGCCAATTGATGATCCTGATAGGCTCACTAAGATCAAACAACTTCTCCTATGTATTCTAATCGGTGATAGA GATAAACGAAGTGCCAATACAGCTGTGTCCGTGGGTTCCACTCACAAGGAGAGGAGGCTGCATCAGATGATGTATGCTGATCGTGATTATGACGTGGATG ATGCAGATTGTAGCTCAGCAAGTGAACGCAACCGTTTTGTAACGGTGGAAAACTGTGTAGATAAGGGTTACACTGTTGTGAACTTGAGGTGTCCAGACCG GCCGAAGCTAATATTTGATACAGTGTGCACGTTAACTGACATGCAATATGTAGTATATCATGCAATTATCATAGCTGAAGGACCGGAGGCTTGCCAGGAG TATTTTATTAGGCATATGGATGGGTCCCCAATTAATTCCGAAGCAGAGAGGCAAAGACTAATTAATTGCTTGGAGGCTGCTATTAGGAGGAGAACTTCTG AGGGCGTAAGATTGGAACTTTGTTCTGAGGATAGGGTCGGCCTTTTGTCTGACGTGACTCGCATTTTTAGGGAAAACGGTCTTTCAGTCACTCGAGCTGA GGTTACTACCAGAGGTTCCCAGGCTGTGAATGTTTTCTTCGTCACTGATTCATCAGGACATCCAGTGAAGAGTGAAACTATTGAAGCAGTTAGAAAAGAG ATCGGTTTGACTATACTTAATGTGAATGATGATGCTTACTCGAAGTCTCCGCCCCAGGAACGTGGGTTATTGTCTTTAGGTAATATCTTTCGATCAAAGT CAGAGAAGTTCCTTTATCACTTGGGTCTAATAAAGTCAAATTCTTGA
AA sequence Show only first row Show all	>Potri.003G167800.1 pacid=42785414 polypeptide=Potri.003G167800.1.p locus=Potri.003G167800 ID=Potri.003G167800.1.v4.1 annot-version=v4.1 MDCWSPLTMDDEFEKLVIRMNPPRVTVDNASSRTATLIEVDSANKRGSLLEVVQVLTDLNLLIRRAYISSDGEWFMDVFHVTDQHGNKLSEDDVAERIQQ SLGPRGPSFRSLRRSVDVQGAAEHTTIELTGRDRPGLLSEIFAVLAGLKCNVVASEIWTHNSRMASVVYITDEATGLPIDDPDRLTKIKQLLLCILIGDR DKRSANTAVSVGSTHKERRLHQMMYADRDYDVDDADCSSASERNRFVTVENCVDKGYTVVNLRCPDRPKLIFDTVCTLTDMQYVVYHAIIIAEGPEACQE YFIRHMDGSPINSEAERQRLINCLEAAIRRRTSEGVRLELCSEDRVGLLSDVTRIFRENGLSVTRAEVTTRGSQAVNVFFVTDSSGHPVKSETIEAVRKE IGLTILNVNDDAYSKSPPQERGLLSLGNIFRSKSEKFLYHLGLIKSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.003G167800 [exp]	0	1
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.010G191900 [exp]	2.82	0.8691
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Potri.008G039600 [exp]	7.34	0.8724	Pt-MDPIP1.2
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	7.87	0.8765
AT5G24320			Transducin/WD40 repeat-like su...		Potri.005G057600 [exp]	10.24	0.7971
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.001G060100 [exp]	10.95	0.8567
					Potri.004G140000 [exp]	14.28	0.8700
AT1G78110			unknown protein		Potri.005G166400 [exp]	18.54	0.7847
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	20.78	0.8507
AT3G26890			unknown protein		Potri.015G103500 [exp]	20.88	0.7308
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.008G161100 [exp]	22.04	0.6870

Compare expression of checked genes

Potri.003G167800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.