Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47610 239 / 1e-77 transcription regulators;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068900 [exp] 283 / 4e-95 AT3G47610 408 / 3e-141 transcription regulators;zinc ion binding (.1) Potri.013G015700 [exp] 51 / 3e-07 AT4G27190 257 / 2e-70 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024226 [exp] 243 / 4e-79 AT3G47610 421 / 5e-146 transcription regulators;zinc ion binding (.1) Lus10023596 [exp] 229 / 2e-73 AT3G47610 466 / 2e-163 transcription regulators;zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06221 [poplar] [flax] zf-C2HC5 Putative zinc finger motif, C2HC5-type
Representative CDS sequence Show only first row Show all	>Potri.003G168100.2 pacid=42785585 polypeptide=Potri.003G168100.2.p locus=Potri.003G168100 ID=Potri.003G168100.2.v4.1 annot-version=v4.1 ATGAGTCAAAGGAAACTCAATTCTGGTCAAAGGGAAAAAAGAAGTTTTATGAGAGGAAAGTGTTTTCTTTTCTCTATTCTAAGGAAAACACTTTCCCATG AAGCACCTTTTCTTTGCCTCGTCTTCATCTCCAAAATCTCTGTTAGCCTTTTCAGCGATAATATTCACACTAGCAAACCACTTTCCAACATCAAAATGGG AAAAGTTGTTTCACTTGCAGAGGCTGCCAAAGGGTCATTTGTCTTCCAGCAGGGGAAGCCATGCCCATGTCAAGCCCGTCAGCATAGACTGATGAGTAAT TGCTTATCCTGTGGCAAGATTGTCTGCGAACAAGAAGGAGAGGGGCCTTGCAGTTTCTGCGGCGCCCTTGTGTTAAAGGAAGGAAGTACGTATGATGGTC TTGAAGAAAGCACGGCTCCTACATCTGATGCTAAATTTGCAGCTGAGGCTTATGCTAAAAGGCTTGTGGAGTATGATCGAAATTCTGCAGCACGTACAAC TGTTATTGACGACCAAAGTGATTACTATGAGATAGAAGGCAACAATTGGCTATCAAATGAGGAGAAGCAACTCTTGAGGAAGAAACAAGAGGAAACAGAA GAAGCAGAACTGGCTAAGAGAAGTAAAGTGGTTGTGACTTTTGATTTGGTTGGACGCAAGGTATCGAATTTTTAG
AA sequence Show only first row Show all	>Potri.003G168100.2 pacid=42785585 polypeptide=Potri.003G168100.2.p locus=Potri.003G168100 ID=Potri.003G168100.2.v4.1 annot-version=v4.1 MSQRKLNSGQREKRSFMRGKCFLFSILRKTLSHEAPFLCLVFISKISVSLFSDNIHTSKPLSNIKMGKVVSLAEAAKGSFVFQQGKPCPCQARQHRLMSN CLSCGKIVCEQEGEGPCSFCGALVLKEGSTYDGLEESTAPTSDAKFAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIEGNNWLSNEEKQLLRKKQEETE EAELAKRSKVVVTFDLVGRKVSNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	0	1
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	3.87	0.8620	Pt-CYCB2.2
AT2G24400			SAUR-like auxin-responsive pro...		Potri.010G253800 [exp]	5.09	0.8045
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.011G023401 [exp]	6.70	0.8560
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	6.92	0.8620	CYP89A27P
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Potri.006G110500 [exp]	8.83	0.8526
AT1G10330			Tetratricopeptide repeat (TPR)...		Potri.018G003300 [exp]	9.94	0.8442
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G099600 [exp]	13.41	0.7998
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	14.14	0.8051
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	15.29	0.8483
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.012G032100 [exp]	16.94	0.7844

Compare expression of checked genes

Potri.003G168100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.