Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27990 320 / 2e-109 unknown protein AT5G52420 125 / 2e-34 unknown protein AT5G23920 96 / 3e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059500 [exp] 472 / 1e-169 AT1G27990 308 / 7e-106 unknown protein Potri.015G146400 [exp] 139 / 2e-39 AT5G52420 259 / 3e-87 unknown protein Potri.012G143300 [exp] 70 / 6e-14 AT5G52420 126 / 3e-36 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037043 [exp] 359 / 4e-125 AT1G27990 306 / 2e-105 unknown protein Lus10015763 [exp] 343 / 4e-119 AT1G27990 302 / 5e-104 unknown protein Lus10039248 [exp] 119 / 1e-31 AT5G52420 212 / 8e-69 unknown protein Lus10027495 [exp] 100 / 6e-25 AT5G52420 159 / 8e-49 unknown protein Lus10039249 [exp] 95 / 9e-23 AT5G52420 160 / 2e-49 unknown protein Lus10027493 [exp] 44 / 8e-06 AT5G52420 52 / 4e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G168400.2 pacid=42786557 polypeptide=Potri.003G168400.2.p locus=Potri.003G168400 ID=Potri.003G168400.2.v4.1 annot-version=v4.1 ATGACTTTCTGTTTAGATATTCATTCATTATCTGATTTCTGTTTGACATTTCATGCTAATTCTGCTCAACACATTTTAACTGCTACCATTTTTTGCATGC CCTGTTCTTATTCTGAACCATCCAAACTTTTAATACAGAGAAATTTATACCAAGTTAAAGGAGAAATGTCGGGTGTCTCTCTCGCTGTGAATCCACCATA TGAACCTAATGGAACCACTGTTTCAGCAACAAAGGCTCAGCAAAAGGCTCCGCTTAGGCGACAGGAACAGCAGAATTCGATGGTAGGAGGTTTAATGGGA TCATTGCGTGTTATAGAACTTCAACTAGTAGCCTTCATTATGGTTTTCTCAATTAGTGGCCTTGTCCCACTACTTGATCTAGTCTTCCCAGCCTTCACCT CTGCTTATCTTCTAGCCCTCTCGCGCTTCGCTTTCCCTTCATATGGCAGAACCTCATCAGGGATTTTCCAAGGAAGCAGATTTTTTAGATTCTACGTCAT TTTGGGAACAACCATAGGACTGTTCTTGCCCCTAGCCTACGTGTTGGGTGGGTTTGCAAGGGGTGATGATCAAGCAGTCCGGTCAGTAACACCTCATTTG TTCTTGCTCTCGTTTCAGATCCTTACTGAGAACATAATAAGTGGTCTGTCGTTGTTTTCACCGCCAGTGAGGGCATTAGTACCCTTGCTTTATACGGTCA GGAGGATCTTCGTTATCATTGATTGGATAAACGATGTGTGGCTTACCAAAACTCTACCAGCAACTGCTCAAGTTAAGGACATTGCGTGGTATTGGTTTGG GAGGAGTCTAGCAGCTGCCAATCTAGCATATTTCTCAATCAATCTTCTTCTTTTTTTGATCCCGAAATTCCTTCCACGGGCTTTTGAGAAGTATTTCAGG GAGATGGGTGAAAATGAATCAAAGATGGCAGAGGACAAGCGTTTTGCAGCTGCAAACAAAACCAAATCAGCAGATAAGAAAGCTGCTTAG
AA sequence Show only first row Show all	>Potri.003G168400.2 pacid=42786557 polypeptide=Potri.003G168400.2.p locus=Potri.003G168400 ID=Potri.003G168400.2.v4.1 annot-version=v4.1 MTFCLDIHSLSDFCLTFHANSAQHILTATIFCMPCSYSEPSKLLIQRNLYQVKGEMSGVSLAVNPPYEPNGTTVSATKAQQKAPLRRQEQQNSMVGGLMG SLRVIELQLVAFIMVFSISGLVPLLDLVFPAFTSAYLLALSRFAFPSYGRTSSGIFQGSRFFRFYVILGTTIGLFLPLAYVLGGFARGDDQAVRSVTPHL FLLSFQILTENIISGLSLFSPPVRALVPLLYTVRRIFVIIDWINDVWLTKTLPATAQVKDIAWYWFGRSLAAANLAYFSINLLLFLIPKFLPRAFEKYFR EMGENESKMAEDKRFAAANKTKSADKKAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27990			unknown protein		Potri.003G168400 [exp]	0	1
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Potri.015G099700 [exp]	4.89	0.8737
AT2G25890			Oleosin family protein (.1)		Potri.006G234900 [exp]	6.32	0.8147
					Potri.015G106700 [exp]	7.21	0.7858
AT1G06750			P-loop containing nucleoside t...		Potri.002G043000 [exp]	12.00	0.7506
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G020367 [exp]	12.08	0.8287
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.001G092100 [exp]	12.32	0.8089
AT2G38905			Low temperature and salt respo...		Potri.008G044300 [exp]	14.42	0.8164
					Potri.010G115900 [exp]	16.34	0.8226
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Potri.001G173200 [exp]	22.04	0.8129
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.001G151500 [exp]	26.19	0.7839	EXLB1.2

Compare expression of checked genes

Potri.003G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.