Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13090 100 / 6e-25 unknown protein AT1G24270 97 / 4e-24 unknown protein AT1G12020 79 / 4e-17 unknown protein AT1G62422 76 / 1e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059400 [exp] 283 / 7e-96 AT5G13090 119 / 8e-32 unknown protein Potri.015G099400 [exp] 109 / 1e-27 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1) Potri.012G101200 [exp] 99 / 2e-24 AT5G13090 93 / 2e-22 unknown protein Potri.011G022900 [exp] 83 / 1e-18 AT1G12020 115 / 2e-31 unknown protein Potri.004G001800 [exp] 80 / 2e-17 AT1G12020 135 / 3e-39 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011343 [exp] 100 / 1e-24 AT5G13090 149 / 2e-43 unknown protein Lus10003131 [exp] 91 / 1e-21 AT1G24270 87 / 2e-20 unknown protein Lus10029957 [exp] 66 / 2e-12 AT1G62422 141 / 2e-42 unknown protein Lus10031521 [exp] 62 / 3e-11 AT1G62422 125 / 4e-36 unknown protein Lus10015161 [exp] 52 / 5e-08 AT1G62422 97 / 8e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G168500.1 pacid=42785488 polypeptide=Potri.003G168500.1.p locus=Potri.003G168500 ID=Potri.003G168500.1.v4.1 annot-version=v4.1 ATGAAGATAAAGAACAAAGGTAAAGTATATCCATCTCCAACTCCATCTCCATCTCCATCTCCATCTTCTTCTTCTTCTTCTTCTTCTTCTGTTGGTGCTA AAAGAGATGGTGATGTTCTCTCTGTGTTAAAGCTTTTACCTGCTGCTATTCTTGCTTTAGCTTCTGTTCTTTCACTTGAAGACCGTGAAGTTCTTGCTTA CATGATTACGAGGTCCTTAAAAACCACTATCACAAACAACCCGTCTTCTTTCCTTCAAGATTCTAAGAAAAAATCCTCCAAGAAACCACAAAACAATAAT AATAGCCAGACTAGTAACCATAGAGCTCCAATCTTTGATTGTGATTGCTTTGACTGCTATAGAAGCTACTGGTTCAGGTGGGATTCTTCTCCTAACCGTG AACTCATTCATCAAGTTATCGAATCCTTTGAAGAACACTTGACCAGCGGTGAAATGTCAAGGAAAAGTAATAGAGGTAAAAGGAGAGACAAAACGGGTCA TCGGGCCGGTGAAAAACCGGTTCTTGATGTTCCGGGTCAACCCGAGATACTACCAGTTCTGGAGACCAGTAATACTTCCGCCCATGAATCCCCCCCTACT GGGTCGGTTGCTGATGTTGCTAATGTCAATGTTGGTTGTCCGGATAATGGCTTGTCACCTGAGAAGATAACCGAGAGGGAAGAAATGGAGGAGGCTGTCA AGCTTTATGATGAAGTGTCAGAGGAAGTGGTGGCAGCGGAGACAGAAGTGGAAGCGGCTGCTCATGGGGTGGCGGTGTGTAGCCGCCACAAGGGTTTGGC AAGGAAGGTGTTGCCGGATGTGTTAGGGTTGTTAAATTCTCGTTTATGGAGTCTTTTGAGTCCGAATGTGTAA
AA sequence Show only first row Show all	>Potri.003G168500.1 pacid=42785488 polypeptide=Potri.003G168500.1.p locus=Potri.003G168500 ID=Potri.003G168500.1.v4.1 annot-version=v4.1 MKIKNKGKVYPSPTPSPSPSPSSSSSSSSSVGAKRDGDVLSVLKLLPAAILALASVLSLEDREVLAYMITRSLKTTITNNPSSFLQDSKKKSSKKPQNNN NSQTSNHRAPIFDCDCFDCYRSYWFRWDSSPNRELIHQVIESFEEHLTSGEMSRKSNRGKRRDKTGHRAGEKPVLDVPGQPEILPVLETSNTSAHESPPT GSVADVANVNVGCPDNGLSPEKITEREEMEEAVKLYDEVSEEVVAAETEVEAAAHGVAVCSRHKGLARKVLPDVLGLLNSRLWSLLSPNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13090			unknown protein		Potri.003G168500 [exp]	0	1
AT1G29160	DOF	AtDof1. 5	Dof-type zinc finger DNA-bindi...		Potri.011G065900 [exp]	4.00	0.7804
AT5G41390			PLAC8 family protein (.1.2)		Potri.014G087600 [exp]	4.89	0.7687
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140300 [exp]	9.00	0.8206	ZOG1.10
AT3G10190			Calcium-binding EF-hand family...		Potri.016G040900 [exp]	19.33	0.7930
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	19.89	0.7457
					Potri.017G050200 [exp]	23.08	0.7320
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.015G086200 [exp]	27.71	0.7361
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.009G123400 [exp]	29.39	0.7021
AT5G47710			Calcium-dependent lipid-bindin...		Potri.006G004600 [exp]	34.74	0.7137
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.001G230500 [exp]	35.49	0.7310	ATCS.2

Compare expression of checked genes

Potri.003G168500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.