Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14090 151 / 4e-42 unknown protein AT3G27025 45 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059100 [exp] 590 / 0 AT5G14090 152 / 3e-42 unknown protein Potri.001G327500 [exp] 235 / 5e-74 AT5G14090 170 / 2e-49 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037042 [exp] 262 / 2e-84 AT5G14090 133 / 2e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G168700.1 pacid=42785598 polypeptide=Potri.003G168700.1.p locus=Potri.003G168700 ID=Potri.003G168700.1.v4.1 annot-version=v4.1 ATGAAGTTACTAGGTTGGATGCACCGTAAGCTTCGGCAAAATGGTAGTGAACCACTGAAGGATTTTGCTATTGGCAATGCTTGCAATTGCCTTACTGGAC AGCCATCACTTGATGACCACCAACACTACAGAAAACCGAACTATGGGACCAGAACATTTAGGCAGGCCCAGAAAGAGCAGCTTCGAAATTCTTTTTCTGG CTTAGAAGCAGCTCGAGTAGAAGAAGAAGAAAAAGAAGAAGAAGGAGACTACGAAGAAGAATCATCAGCTGCAATATCCGAGCTATTCCATGGTTTTCTG GCAATCGGTACCTTTGGTTCAGAGCCAGTCAACACTGACCCATCAACACCAACATTTCCCATCTCTGTCGAGAATATAACTGAGAAAGAGACTGAGGTGA CAGAGAATGAACTGAAGCTCATTAATGATGAGTTGGAAAAGGTTCTGGCAGAAGATTGCTGCAATGACTCATCAGGAAGGAACAGTTATGTTAGTGCTGG AAGAAGCAGTCATGGCAGCACTATTACACTCAGTGGCAAGCCAATGGAAGGGCGAGATTCCAATGCAGTCTGTCCCCTGCAGGGATATCTCTTCGGATCA TCAATTGAACTTTCAGAGACAACACCAGTGGCAAAGAAGGAACACAGGACATCACTTGGCGAGCTATTTCAGAAAACAAAAATAGCAGAGGAAAATTCTG GGATTAAATTTGAGAGAGAGGAGAAGCGCATGGAGAAGGAAGCTGATAAATCTGCCGTGAATCTCATGAAAAAGACTCTGAAGAAGAAAATGCTCAATGC TTCTTCTAGGAGCTCTACTTCAGCTGGAGGAGGAACTCTTGATTCTGCTTCAGCAGAAACAAAACTGAGCAAGATCCTACACATGTTCCACAGGAAAGTT CATCCTGAAAGCTCAACATCCACGAGGAAGGCCGGCAAGCCCCAAAAAAATGAGAATAAGAAGAGCAACAACAATGGGGGTCAGGTACTCCCGAATGAGG ACATCACCATAGTTCCTCGAACCCTTTCAAGGAGGAGCACAAGACGCTTCAAGAGTCAATCTAACCCACCCCACTTCACGTTTACGGGCTGTGAATCTAA CGAAAGCAGGGAATGCTGGATTAAAACAGATGCAGACTACCTGGTTTTGGAGCTGTGA
AA sequence Show only first row Show all	>Potri.003G168700.1 pacid=42785598 polypeptide=Potri.003G168700.1.p locus=Potri.003G168700 ID=Potri.003G168700.1.v4.1 annot-version=v4.1 MKLLGWMHRKLRQNGSEPLKDFAIGNACNCLTGQPSLDDHQHYRKPNYGTRTFRQAQKEQLRNSFSGLEAARVEEEEKEEEGDYEEESSAAISELFHGFL AIGTFGSEPVNTDPSTPTFPISVENITEKETEVTENELKLINDELEKVLAEDCCNDSSGRNSYVSAGRSSHGSTITLSGKPMEGRDSNAVCPLQGYLFGS SIELSETTPVAKKEHRTSLGELFQKTKIAEENSGIKFEREEKRMEKEADKSAVNLMKKTLKKKMLNASSRSSTSAGGGTLDSASAETKLSKILHMFHRKV HPESSTSTRKAGKPQKNENKKSNNNGGQVLPNEDITIVPRTLSRRSTRRFKSQSNPPHFTFTGCESNESRECWIKTDADYLVLEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14090			unknown protein		Potri.003G168700 [exp]	0	1
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.016G143833 [exp]	2.44	0.9665
AT3G60670			PLATZ transcription factor fam...		Potri.014G059300 [exp]	7.61	0.9358
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G029200 [exp]	7.74	0.9597
AT2G22590			UDP-Glycosyltransferase superf...		Potri.018G140401 [exp]	9.48	0.9507
AT2G44930			Plant protein of unknown funct...		Potri.017G019300 [exp]	10.00	0.9479
AT5G45540			Protein of unknown function (D...		Potri.015G059200 [exp]	13.07	0.9529
AT5G45530			Protein of unknown function (D...		Potri.010G154866 [exp]	14.42	0.9565
AT4G19090			Protein of unknown function (D...		Potri.012G018500 [exp]	15.29	0.9510
AT3G50180			Plant protein of unknown funct...		Potri.006G042873 [exp]	19.00	0.9495
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Potri.009G060300 [exp]	19.84	0.9063

Compare expression of checked genes

Potri.003G168700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.