Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27980 796 / 0 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1) AT3G17760 90 / 7e-19 GAD5 glutamate decarboxylase 5 (.1.2) AT5G17330 88 / 2e-18 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT1G65960 82 / 2e-16 GAD2 glutamate decarboxylase 2 (.1.2) AT2G02000 78 / 4e-15 GAD3 glutamate decarboxylase 3 (.1) AT2G02010 76 / 1e-14 GAD4 glutamate decarboxylase 4 (.1) AT4G28680 47 / 2e-05 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4) AT2G20340 44 / 0.0003 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G65720 42 / 0.001 ATNIFS1, NIFS1 ,ATNFS1 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059001 [exp] 138 / 2e-39 AT1G27980 127 / 5e-36 dihydrosphingosine phosphate lyase (.1) Potri.004G075200 [exp] 87 / 5e-18 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.017G144421 [exp] 81 / 4e-16 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075300 [exp] 81 / 4e-16 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.012G039000 [exp] 77 / 1e-14 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.010G100500 [exp] 76 / 3e-14 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.008G141100 [exp] 75 / 4e-14 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.007G000600 [exp] 45 / 0.0002 AT5G65720 716 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Potri.002G255600 [exp] 44 / 0.0002 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011345 [exp] 809 / 0 AT1G27980 794 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10003129 [exp] 797 / 0 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10028530 [exp] 82 / 4e-16 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10019136 [exp] 79 / 2e-15 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10035096 [exp] 77 / 2e-14 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10034425 [exp] 72 / 1e-13 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10011590 [exp] 47 / 3e-05 AT5G65720 748 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2) Lus10022856 [exp] 45 / 0.0002 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00282 [poplar] [flax] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Potri.003G168800.1 pacid=42786258 polypeptide=Potri.003G168802.1.p locus=Potri.003G168800 ID=Potri.003G168800.1.v4.1 annot-version=v4.1 ATGATGGATCGTATTATTTCTTCTTTGATTGATTTTAGAGCTTTTGCTAATTCTTTTTTATCAAATTATGAGCCTCTAGCTTTGCTTCTTGCTCCTCTTC TCACTCTTTTTACTGCCCGAATTCTTCAATCATTATGTCTTCTTGTTCACGATAATGGTCTCAAACCCACCATTTTAGGGTTTCTAATCACCTCCATCAA GATGGTGCCTGGTGTCAAGGGTTATATAGAAGCAGAGAAACAGAAGGTCGTGGAGAAGTTGCAGTCTGGAAGTAAATCTAAAAGAGATGGCTGGAGATCG GAGCTACCAAAGGAAGGTTTAGGAGCAGCAGTGATAGAGAAATTGAAACAGGAGAAAAGTAATGATGTGGTTTGGCAAGGAAAATGTTCTGGTACCGTCT ACATTGGAGGGAGTGAATCTGAAGGACATTTTTCTCTGATAAATGAGGCATGCTCAATGTTTGCACATACTAATCCACTGCATATGGACGTGTTCCAAAC CATAGCACAATGTGAGGCAGAAGTGGTAGCTATGACGGCAGCACTACTTGGCAGCAAAAACAAATCTTCCGGAGGAGAAATATGCGGTAACATGACTTCA GGAGGAACTGAAAGTATATTATTGGCCGTGAAATCATCCCGTGACTATATGAAAGCTAAGAAGGGAATCAAAAGACCAGAAATGATCATACCTGAATCTG CACACTCAGCATATGACAAGGCAGCACAATATTTCAACATCAAGCTGCGGCGTGTTCCAGTCAATAAAAATTTTCAAGCTGATGTCAAAGCAATAAGACA GCAGATTAACAAGAACACTGTTTTGATTGTTGGATCTGCACCTGGGTTTCCTCATGGCATCATTGATCCTATTGAGGAGCTTGGTGAATTGGCATATAGC TATGGAATATGTTTCCATGTTGACCTTTGTCTTGGTGGCTTTGTATTGCCTTTCGCTTGTAAGCTAGGGTACCCGATTCCACCTTTTGATTTTTCTGTTA AAGGAGTAACCTCAATATCAGCGGATGTGCATAAATATGGACTGGCACCAAAAGGAACAAGTGTAGTTCTATACAGAAATCATGATATTAGAAAGCATCA ATTTGTTGCTGTGACTGAGTGGTCAGGTGGGCTCTATGTCTCTCCTACTATTGCTGGAAGCAGGCCTGGAGGTTTGATTGCTGGGGCTTGGGCGGCGTTG ATGGCTCTGGGGCTAGAAGGGTACCTGGAAAACACTAAAGCAATAATGGAAGTATCAAAGAGAATACAGAAAGGGATTAAAGAAATACCAGAGTTATTTA TCATTGGAAGGCCAGACATGACAATTGTGGCATTTGGATCTAATGATCTAGACATATTTGAAGTCAATGATATCATGTCATCCAAAGGCTGGCATTTGAA TGCATTGCAAAGACCCAACAGCATTCATATCTGCATTACCCTTCAACATGCACCCGTTGTTGAGGACTTCCTCCGGGATTTGAAGGAATCTGTACAAACT GTGAAAGAGAATCCTGGTCCAATAAATGGAGGCCTAGCTCCAATATATGGTGCTGCTGGGAAGATACCAGATAGAGGCATGGTTCAGGAATTGCTGGTGA ACTACATGGACAGTACATGCTAA
AA sequence Show only first row Show all	>Potri.003G168800.1 pacid=42786258 polypeptide=Potri.003G168802.1.p locus=Potri.003G168800 ID=Potri.003G168800.1.v4.1 annot-version=v4.1 MMDRIISSLIDFRAFANSFLSNYEPLALLLAPLLTLFTARILQSLCLLVHDNGLKPTILGFLITSIKMVPGVKGYIEAEKQKVVEKLQSGSKSKRDGWRS ELPKEGLGAAVIEKLKQEKSNDVVWQGKCSGTVYIGGSESEGHFSLINEACSMFAHTNPLHMDVFQTIAQCEAEVVAMTAALLGSKNKSSGGEICGNMTS GGTESILLAVKSSRDYMKAKKGIKRPEMIIPESAHSAYDKAAQYFNIKLRRVPVNKNFQADVKAIRQQINKNTVLIVGSAPGFPHGIIDPIEELGELAYS YGICFHVDLCLGGFVLPFACKLGYPIPPFDFSVKGVTSISADVHKYGLAPKGTSVVLYRNHDIRKHQFVAVTEWSGGLYVSPTIAGSRPGGLIAGAWAAL MALGLEGYLENTKAIMEVSKRIQKGIKEIPELFIIGRPDMTIVAFGSNDLDIFEVNDIMSSKGWHLNALQRPNSIHICITLQHAPVVEDFLRDLKESVQT VKENPGPINGGLAPIYGAAGKIPDRGMVQELLVNYMDSTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Potri.003G168800 [exp]	0	1
AT1G55265			Protein of unknown function, D...		Potri.001G008320 [exp]	12.96	0.7410
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032400 [exp]	30.59	0.7886
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Potri.011G106300 [exp]	30.85	0.7893
AT4G27120			unknown protein		Potri.001G418900 [exp]	37.46	0.7815
AT5G25265			unknown protein		Potri.006G258800 [exp]	39.26	0.6952
AT3G50845			Protein of unknown function (D...		Potri.005G123100 [exp]	43.26	0.7687
AT3G51130			unknown protein		Potri.007G015800 [exp]	53.57	0.7411
AT2G19570		DESZ, AT-CDA1, ...	cytidine deaminase 1 (.1)		Potri.006G150600 [exp]	55.38	0.7553	CDA1.1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	69.64	0.7350	CTR1.4
AT1G24560			unknown protein		Potri.010G049400 [exp]	73.97	0.7005

Compare expression of checked genes

Potri.003G168800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.