Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41020 400 / 3e-131 MYB myb family transcription factor (.1) AT4G32730 50 / 6e-06 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G02320 45 / 0.0001 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT3G09370 43 / 0.0009 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095000 [exp] 978 / 0 AT5G41020 410 / 1e-134 myb family transcription factor (.1) Potri.018G038000 [exp] 48 / 2e-05 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G241700 [exp] 47 / 3e-05 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.005G074500 [exp] 42 / 0.0009 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022926 [exp] 448 / 2e-150 AT5G41020 359 / 1e-117 myb family transcription factor (.1) Lus10041714 [exp] 414 / 7e-137 AT5G41020 337 / 1e-108 myb family transcription factor (.1) Lus10024036 [exp] 409 / 4e-135 AT5G41020 336 / 3e-108 myb family transcription factor (.1) Lus10022932 [exp] 140 / 4e-38 AT5G41020 112 / 7e-29 myb family transcription factor (.1) Lus10011687 [exp] 47 / 5e-05 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 47 / 8e-05 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10036472 [exp] 45 / 0.0002 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10041142 [exp] 44 / 0.0004 AT1G34670 315 / 2e-106 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G168900.1 pacid=42786254 polypeptide=Potri.003G168900.1.p locus=Potri.003G168900 ID=Potri.003G168900.1.v4.1 annot-version=v4.1 ATGGGTACCAAAACGGTGGGGAGGCAACAGCATGAGAAAAGGAAAACAAAGGATGAGGATGATTCCTTGAAAGCCAAAGATTCATTGCTTGTGAGTGGAG GGGAGGGTTTAACTCTGAATAGTGAATGCAAGAAAAAGACGAAGAAGAAGAAGAGTGAGGGCCATGAGGATAGCATTGAGGATTCTGCAGTAAGTTCTAG TCTAAGTGAGGGTAATGTTAATGCAGCAGGCAAGGGTGAGAAGAAGGAGAAGAAGACAAAGAAGAAGAGTGAGAAATATGAGTTAGTAAGTTCTAGTCTA AGTGAGGGTAATGTAGACTTGAATAATGTTGCTGACAAGAAGGAGAAGAAGAAGAAGAGAAAGTTGGAGCATGTTAATAATGAGAAAGAATCTCAGGTGT CCAAGAAGAAAAATAAGATGAGTGAAGTGAGAGAGGCTTTAGGGGAGACCCACATGAGAATAGATGATAATTTGGGATTGCAAAAGAATGTCCAGGTGGA TTTTGTCAGCAATTCTGAGTCAGAAGTGAGAAGAGATAGGAAAAAAAATCACAAGGAGAAAAACAGAGAAGGTAAAGCTATCACTGTTTCTTCTGTGCTC AACAGTGTCGATGATAACAGAAGGGGAGAGGTGTTTGAGGTACAGAAAGGCCCTCGGAATGAAGATATTGCTAACATGAATAACAGGGAAGGACAGGGCC GCAAGAAGGAAAAGAAGAGGAAACAGAATAAGTATGATGATGGCAGTGGTGATACTGAGATAGTTAAAAGTGTAGCTGATGGAAAAGATGCTGGAAGAGA GGAGTCAATTGAAGTTGTTCAGGACAAGGTAGAGTCTTCAAAGAAGGAGAAGAAGAAAAAGAAGAAAAAGCTCAATGTTGTTCTAGAGGCTGCATCAATG CAAATTATGGCTGAGACAACAGGTAACCAAAACAGTGTAATAGAAGGTGATGGAGGTAACAGAAGTTCGATTAAAAATAAGGCTAGAGATGGAAAACTAA AGGTCAATGCTGAAGGTGGAAACAAAAGGAAGAAGAAGGCCAAGTCTTTGGAAAATCGTTCAAAAGAAAAAAGTAGTGAAAGAGTAACAGAAATGGAGGA AGACGCTGAAAGCACTCGTCCATCTGAAAAATCTTTATCAAAAGTGACATCTAAGAGAGTAAGTTTCTGTGAAGATGTCGAGATTTTCCCTTCATCTGAT GGTCCTAGTGATAAGAAGGCTGTTGGGGAAGACGGCTTTGTGCGAGGGAAGCGGTTCTCACTTGAGGAGGATGAGATGGTTAAAGAAGCTGTTTTAAACT ATATTAATGTTCATGGTTTAGGTGCAGACGGTCTAAACATGGTTCTGAATTGTAAAAAGCACCCTGCGATTAAACATTGCTGGAAGGAGATTGGGGCAGC CTTACCCTGGAGGCCTCGTGAGAGTGTCTATTATCGAGCCCATATATTGTTTGAAAGGGACCAGAATTCTTCTTGGACCCCAGAAGAGTATGATCTCATC CGAAAGTTTCATGAAAAACATGGATCAGACTGGAAGACACTGGCAGAAGCCTTGGGTAAACATAGGTTTCATGTAAAGGATACATGGCGCAGAATAAAAT TGATCAATATGAAGAAAGGGAAATGGTCTCAAGATGAGTACCAGTCTTTATTTGATTCGGTGAACTTGGATCTGCGCTTGAAAGCTTTTGTTGAAAGGAA GACAAAGCATGGGATGTTACGAGATAATATTAGTTGGACAGCAATTAGTGAGAAGTTGGAAACTAGGACTGATGCTCTCTGCTGCCAAAAATGGTATGAT CAATTAACGTCACCTATGGTAGCTGAAGGTAAATGGCTTGATACAGATGACTATCGGCTGCTGATGGAGCTCTACGACTTGGATGCTTGCTGCATGGAAG ATGTTGACTGGGACAATCTTCTAGAGCACAGGTCTGGAGATCTGTGCCGGAAGCGATGGAACCAAATGGTCAAACACCTTGGTGACCATCGTAACAAATC ATTTGCTGATCAAGTTGATGTTCTCATTAACCGGTACTGTCATGACGTGCTTGAAGCAAGAGAGGCCTACAATAGCAAACCTGCTGTTCCTTGA
AA sequence Show only first row Show all	>Potri.003G168900.1 pacid=42786254 polypeptide=Potri.003G168900.1.p locus=Potri.003G168900 ID=Potri.003G168900.1.v4.1 annot-version=v4.1 MGTKTVGRQQHEKRKTKDEDDSLKAKDSLLVSGGEGLTLNSECKKKTKKKKSEGHEDSIEDSAVSSSLSEGNVNAAGKGEKKEKKTKKKSEKYELVSSSL SEGNVDLNNVADKKEKKKKRKLEHVNNEKESQVSKKKNKMSEVREALGETHMRIDDNLGLQKNVQVDFVSNSESEVRRDRKKNHKEKNREGKAITVSSVL NSVDDNRRGEVFEVQKGPRNEDIANMNNREGQGRKKEKKRKQNKYDDGSGDTEIVKSVADGKDAGREESIEVVQDKVESSKKEKKKKKKKLNVVLEAASM QIMAETTGNQNSVIEGDGGNRSSIKNKARDGKLKVNAEGGNKRKKKAKSLENRSKEKSSERVTEMEEDAESTRPSEKSLSKVTSKRVSFCEDVEIFPSSD GPSDKKAVGEDGFVRGKRFSLEEDEMVKEAVLNYINVHGLGADGLNMVLNCKKHPAIKHCWKEIGAALPWRPRESVYYRAHILFERDQNSSWTPEEYDLI RKFHEKHGSDWKTLAEALGKHRFHVKDTWRRIKLINMKKGKWSQDEYQSLFDSVNLDLRLKAFVERKTKHGMLRDNISWTAISEKLETRTDALCCQKWYD QLTSPMVAEGKWLDTDDYRLLMELYDLDACCMEDVDWDNLLEHRSGDLCRKRWNQMVKHLGDHRNKSFADQVDVLINRYCHDVLEAREAYNSKPAVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41020	MYB		myb family transcription facto...		Potri.003G168900 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	2.00	0.9669
AT1G76810			eukaryotic translation initiat...		Potri.012G039200 [exp]	4.24	0.9460
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	4.58	0.9251
AT5G48610			unknown protein		Potri.017G058701 [exp]	5.74	0.9427
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	5.91	0.9346
AT4G33740			unknown protein		Potri.001G288800 [exp]	6.00	0.9336
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.015G024400 [exp]	6.70	0.9203
AT1G17070			GC-rich sequence DNA-binding f...		Potri.013G076000 [exp]	6.92	0.9238
AT5G43490			unknown protein		Potri.017G058500 [exp]	8.24	0.9371
AT3G51650			unknown protein		Potri.006G107500 [exp]	10.48	0.9156

Compare expression of checked genes

Potri.003G168900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.